Biochemistry and Cell Biology

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Cross-linkers at growing microtubule ends generate forces that drive actin transport
Posted on 2021-11-08
Datasets for evaluating FastqPuri and other RNA sequencing pre-processing tools.
Posted on 2019-04-16
Experimental raw data from: "Adaptability and evolution of the cell polarization machinery in budding yeast" (doi: https://doi.org/10.1101/2020.09.09.290510)
Posted on 2020-09-16
Protein sequencing raw data
Posted on 2024-05-19
Protein sequencing raw data
Posted on 2024-05-19

All datasets

Data and code underlying the publication: ELISL: Early-Late Integrated Synthetic Lethality Prediction in Cancer
Posted on 2024-11-25
Data underlying: Chapter 4. Redox-dependent extracellular interaction networks of Cysteine-rich and Leucine-Rich Repeat Receptor Kinases
Posted on 2024-10-30
Data underlying the chapter: Peroxygenase-promoted enzymatic cascades for the valorisation of fatty acids
Posted on 2023-05-22
Data underlying the publication: Interstitial flow potentiates TGF-β/Smad-signaling in lung cancer spheroids in a 3D-microfluidic chip
Posted on 2024-04-09
Data underlying the publication: Mirror, mirror on the wall which is the greenest of them all? A critical comparison of chemo- and biocatalytic oxyfunctionalisation reactions
Posted on 2023-09-27
Data accompanying the publication: Quantification of GTPase cycling rates of GTPases and GTPase : effector mixtures using GTPase Glo assays
Posted on 2024-04-22
Data accompanying the publication: Quantification of GTPase cycling rates of GTPases and GTPase : effector mixtures using GTPase Glo assays
Posted on 2024-01-22
Data accompanying the publication: Quantification of GTPase cycling rates of GTPases and GTPase : effector mixtures using GTPase Glo assays
Posted on 2023-11-27
Data underlying the article: Physiological and stoichiometric characterization of ethanol-based chain elongation in the absence of short-chain carboxylic acids
Posted on 2023-11-02
Data underlying the chapter and publication: Synthesis of Chiral Amines via a Bi-Enzymatic Cascade Using an Ene-Reductase and Amine Dehydrogenase
Posted on 2024-08-02
Data underlying the chapter and publication: Native amine dehydrogenases can catalyze the direct reduction of carbonyl compounds to alcohols in the absence of ammonia
Posted on 2024-08-02
Data underlying the chapter Discovery and synthetic applications of thermostable NAD(P)H-dependent reductive aminases
Posted on 2024-09-10
Data of manuscript Blood-perfused Vessels-on-Chips stimulated with patient plasma recapitulate endothelial activation and microthrombosis in COVID-19
Posted on 2024-09-17
Data underlying the chapter Mechanistic insights in Lactobacillus brevis alcohol dehydrogenase: stability and active site role of Ser143 and Tyr156
Posted on 2024-08-02
Data underlying the chapter: Discovery and synthetic applications of a NAD(P)H-dependent reductive aminase from Rhodococcus erythropolis
Posted on 2024-08-02
Data supporting the paper "The environmentally-regulated interplay between local three-dimensional chromatin organisation and transcription of the osmoregulated proVWX operon in Escherichia coli"
Posted on 2023-09-26
Data underlying the publication: Specific DNA binding of archaeal histones HMfA and HMfB
Posted on 2023-04-03
Data underlying the publication: Specific DNA binding of archaeal histones HMfA and HMfB
Posted on 2023-04-03
Data underlying the publication: DNA-bridging by an archaeal histone variant via a unique tetramerisation interface
Posted on 2023-09-25
Scripts and data for the paper: Consequences and opportunities arising due to sparser single-cell RNA-seq datasets
Posted on 2024-10-15
Sample dataset and software for FAST-EM array tomography
Posted on 2024-07-15
Data from "Pleiotropy drives evolutionary repair of the responsiveness of polarized cell growth to environmental cues"
Posted on 2023-07-04
Population growth rate data and scripts concerning the publication:"Redundancy and the role of protein copy numbers in the cell polarization machinery of budding yeast"experiments
Posted on 2023-07-19
Data underlying the publication: Imaging Flow Cytometry for High-Throughput Phenotyping of Synthetic Cells
Posted on 2023-12-11
Data underlying the publication: Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending
Posted on 2023-11-07
Microscopy raw and processed data to measure cell size, cell death and multi-nucleated ratio in yeast cells.
Posted on 2023-07-17
Raw data underlying Ch. 2 of PhD thesis: Structure Guided Directed Evolution of Enzymes
Posted on 2023-12-13
Data underlying chapter 3 of PhD thesis: Bacterial chromosome organization by ParB proteins
Posted on 2023-11-23
Data underlying the publication: Histones and histone variant families in prokaryotes
Posted on 2024-07-16
Data underlying the publication: “A chromatinized origin reduces the mobility of ORC and MCM through interactions and spatial constraint"
Posted on 2023-10-16
Data related to Chemo-mechanical Diffusion Waves Orchestrate Collective Dynamics of Immune Cell Podosomes
Posted on 2023-05-23
Microscopy raw and processed data to measure cell size, cell death and multi-nucleated ratio in yeast cells.
Posted on 2023-09-13
Data underlying the publication: A guide to the in vitro reconstitution of Cdc42 GTPase activity and its regulation
Posted on 2023-07-17
Data underlying chapter 5 of PhD thesis: Bacterial chromosome organization by ParB proteins
Posted on 2023-11-23
Data underlying the publication: Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending
Posted on 2024-04-10
Data underlying the publication: Histones and histone variant families in prokaryotes
Posted on 2024-08-12
Data underlying the publication: Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions - Roodmus_image_processing
Posted on 2024-10-14
Data underlying the publication: Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions - Roodmus_DESRES-Trajectory_sarscov2-11021566-11021571-mixed
Posted on 2024-10-14
Data underlying the publication: Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions - Roodmus_DESRES-Trajectory_sarscov2-11021571-all-glueCA
Posted on 2024-10-14
Data underlying the publication: Identification, characterization and classification of Nucleoid-Associated Proteins
Posted on 2024-08-14
Data underlying the publication: SCS causes global protein succinylation contributing to the aflatoxin biosynthesis and development through the STA and Ach1
Posted on 2024-12-19
Integrating Network Pharmacology and Experimental Verification to Explore the Pharmacological Mechanisms of Cordycepin Against Pulmonary Arterial Hypertension
Posted on 2023-06-07
Data accompanying the PhD dissertation "Computational modeling and optimization of biopharmaceutical downstream processes".
Posted on 2024-01-26
Data underlying the PhD thesis "Precision nutrition for cardiometabolic health: insights from human dietary intervention studies"
Posted on 2023-05-16
Data underlying the publication: Unjamming transitions in cancer cell spheroids are linked to EMT-dependent cell-matrix interactions
Posted on 2024-04-10
Data underlying publication "De novo fabrication of custom-sequence plasmids for the synthesis of long DNA constructs with extrahelical features"
Posted on 2023-11-16
Shotgun mass spectrometry raw dataset on budding yeast cells
Posted on 2023-07-03
Data related to Chemo-mechanical Diffusion Waves Orchestrate Collective Dynamics of Immune Cell Podosomes
Posted on 2023-05-08
Sample dataset and software for FAST-EM array tomography
Posted on 2024-07-02
Data underlying the research of adipogenic dedifferentiation enhances survival of human umbilical cord-derived mesenchymal stem cells under oxidative stress
Posted on 2024-12-13
Data underlying the paper: Plasmonic Enhancement of Protein Function
Posted on 2024-08-16
Videos supporting the Doctoral Thesis 'Advancing image-based localization of lipid-based nanomedicines for the exploration of targeted drug delivery'
Posted on 2024-09-03
Data belonging to the research on Application of weighted gene co-expression network analysis to explore the targets of treadmill training in rats with spinal cord injury
Posted on 2023-07-10
Data underlying chapter 4 of PhD thesis: Bacterial chromosome organization by ParB proteins
Posted on 2023-11-23
Data underlying the publication: Clonal Amplification-Enhanced Gene Expression in Synthetic Vesicles
Posted on 2023-12-08
Data from: Impact of Yeast-Derived β-Glucans on the Porcine Gut Microbiota and Immune System in Early Life
Posted on 2020-11-10
Data underlying the publication: Optimization of negative stage bias potential for faster imaging in large-scale electron microscopy
Posted on 2022-09-05
Data underlying the publication: Optimization of negative stage bias potential for faster imaging in large-scale electron microscopy
Posted on 2022-04-20
Lane-optimization-2020
Posted on 2020-09-07
Lane-optimization-2020
Posted on 2020-12-17
Data underlying the publication: Spectral Diversity of Photosystem I from Flowering Plants
Posted on 2022-10-21
Supporting dataset for "Global correction of optical distortions in single-molecule microscopy using Zernike polynomial gradients"
Posted on 2021-12-07
Data underlying the publication: “Nucleotide binding halts diffusion of the eukaryotic replicative helicase during activation”
Posted on 2023-02-03
Data underlying the publication: Phytophthora pathogens exploit slicing action for host invasion
Posted on 2021-03-22
Data underlying the publication: Phytophthora pathogens exploit slicing action for host invasion
Posted on 2021-03-17
Data from the paper An actin mechanostat ensures hyphal tip sharpness in Phytophthora infestans to facilitate host entry.
Posted on 2022-04-04
Data underlying the publication: Fast bioluminescent nucleic acid detection using one-pot isothermal amplification and dCas9-based split luciferase complementation
Posted on 2022-11-25
Data underlying the publication: Integrated Array Tomography for 3D Correlative Light and Electron Microscopy
Posted on 2022-09-05
Data underlying the publication: Integrated Array Tomography for 3D Correlative Light and Electron Microscopy
Posted on 2022-04-20
Data supporting the paper "HI-NESS: A family of genetically encoded DNA labels based on a bacterial nucleoid-associated protein"
Posted on 2021-10-12
Data underlying the publication: Stabilisation of the fatty acid decarboxylase from Chlorella variabilis by caprylic acid
Posted on 2023-03-02
Data underlying the publication "Notch signaling regulates strain-mediated phenotypic switching of vascular smooth muscle cells"
Posted on 2022-07-21
MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"
Posted on 2022-01-28
Data underlying the publication: A cryogenic, coincident fluorescence, electron and ion beam microscope
Posted on 2022-11-04
Computational code underlying the publication “Engineered patterns of Notch ligands Jag1 and Dll4 elicit differential spatial control of endothelial sprouting”
Posted on 2022-05-06
Matlab tools for analysing cell-curvature interactions, used in the publication "Emergent collective organization of bone cells in complex curvature fields".
Posted on 2023-01-19
Fluorescence microscopy, image analysis and quantitative PCR data underlying the publication “Engineered patterns of Notch ligands Jag1 and Dll4 elicit differential spatial control of endothelial sprouting”
Posted on 2022-05-06
LocScale test data
Posted on 2022-06-24
Analysis results of the paper baseLess: Lightweight detection of sequences in raw MinION data
Posted on 2022-07-18
Analysis results of the paper baseLess: Lightweight detection of sequences in raw MinION data
Posted on 2022-07-21
Data underlying the publication: An alginate-confined peroxygenase-CLEA for styrene epoxidation
Posted on 2023-03-02
Data from: Differential immunomodulation of porcine bone marrow derived dendritic cells by E. coli Nissle 1917 and β-glucans
Posted on 2020-05-28
Identification of hub genes and small molecule therapeutic drugs related to simple steatosis with secondary analysis of existing microarray data
Posted on 2021-10-13
Data underlying the publication: The B. subtilis Rok protein is an atypical H-NS-like protein irresponsive to physico-chemical cues
Posted on 2022-11-23
Identification of hub genes and small molecule therapeutic drugs related to simple steatosis with secondary analysis of existing microarray data
Posted on 2021-11-26
Data underlying the research to a: Prognostic model based on six feature genes of intestinal flora subtypes predicts survival in colon cancer
Posted on 2022-09-14
Data underlying the research to a: Prognostic model based on six feature genes of intestinal flora subtypes predicts survival in colon cancer
Posted on 2022-06-08
Data of the PhD thesis "Escherichia coli metabolism under dynamic conditions: The tales of substrate hunting"
Posted on 2020-07-10
Supplementary data to the publication: What’s wrong with SwYG? Reaching the limits of the Saccharomyces cerevisiae molecular and analytical toolbox
Posted on 2021-12-01
Therapeutic Effects of Cordycepin on Monocrotaline-induced Pulmonary Arterial Hypertension in Rats via cGMP/PKG/PPAR-γ Signaling Pathway
Posted on 2022-08-22
Cordycepin can improve Pulmonary Arterial Hypertension in Rats via cGMP/PKG/PPAR-γ Signaling Pathway
Posted on 2022-11-14
Supplementary information to: Simpler is not always better: transplanting the Yarrowia lipolytica glycolytic pathway into Saccharomyces cerevisiae reveals essential synergetic regulatory mechanisms
Posted on 2022-03-01
Cordycepin can improve Pulmonary Arterial Hypertension in Rats via P53-P21 Signaling Pathway
Posted on 2023-02-01
Dataset metabolomics: Measurements of extracellular sugars and intracellular central carbon metabolites in Saccharomyces cerevisiae under steady-state chemostat and feast/famine regimes with different sugar substrates
Posted on 2023-02-28
Dataset proteomics: Analysis of change in protein expression in Saccharomyces cerevisiae upon shift from glucose chemostat to feast/famine regime
Posted on 2022-01-28
Integrating Network Pharmacology and Experimental Verification to Explore the Pharmacological Mechanisms of Cordycepin Against Pulmonary Arterial Hypertension
Posted on 2022-08-22
Dataset proteomics: Analysis of change in protein expression in Saccharomyces cerevisiae upon shift from chemostat to feast/famine regime for different sugar substrates
Posted on 2023-02-28
Data underlying the research of Microbial synthesis of polyhydroxybutyrate in Escherichia coli: a systematic approach using thermodynamics and flux balance analysis studying different synthesis routes
Posted on 2020-08-20
Actin Transport - Raw data
Posted on 2021-11-08
Actin Transport - Optical tweezer force measurements
Posted on 2021-11-08