Biochemistry and Cell Biology

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Cross-linkers at growing microtubule ends generate forces that drive actin transport
Posted on 2021-11-08
Datasets for evaluating FastqPuri and other RNA sequencing pre-processing tools.
Posted on 2019-04-16
Experimental raw data from: "Adaptability and evolution of the cell polarization machinery in budding yeast" (doi: https://doi.org/10.1101/2020.09.09.290510)
Posted on 2020-09-16

All datasets

Actin Transport - Analyzed datasets
Posted on 2021-11-08
Dataset of dynein inhibitor titrations in Xenopus egg extract spindles
Posted on 2020-04-29
Software for Detecting Structural Heterogeneity in Single-Molecule Localization Microscopy Data
Posted on 2021-03-02
Data of the PhD thesis "Escherichia coli metabolism under dynamic conditions: The tales of substrate hunting"
Posted on 2020-07-10
Yeast population growth in different galactose concentrations
Posted on 2020-09-16
Cell size measurements using microscopy for the yeast mutants dbem1, dbem1dbem3 and the wild type using the CDC42-GAL promoter
Posted on 2020-09-16
Data accompanying the research on: Cell size regulation in budding yeast does not depend on linear accumulation of Whi5
Posted on 2020-04-29
Development of an in vitro vascular network using zebrafish embryonic cells
Posted on 2017-03-30
Data underlying the publication "Computational characterization of the dish-in-a-dish, a high yield culture platform for endothelial shear stress studies on the orbital shaker"
Posted on 2020-06-22
Additional data for article "Genome-wide DNA sampling by Ago nuclease from the cyanobacterium Synechococcus elongatus"
Posted on 2019-08-19
Identification of hub genes and small molecule therapeutic drugs related to simple steatosis with secondary analysis of existing microarray data
Posted on 2021-10-13
Identification of hub genes and small molecule therapeutic drugs related to simple steatosis with secondary analysis of existing microarray data
Posted on 2021-11-26
Data Underlying the Publication: "ATP Regeneration by a Single Polyphosphate Kinase Powers Multigram-Scale Aldehyde Synthesis In Vitro"
Posted on 2020-12-23
JCVI-syn3A_F_rep3.hic, data supporting the paper: ‘Generating Chromosome Geometries in a Minimal Cell from Cryo-Electron Tomograms and Chromosome Conformation Capture Maps’
Posted on 2021-06-17
Data underlying the research on phylogenetic network rearrangement move heuristics.
Posted on 2021-01-20
Data underlying the publication: nZVI impacts substrate conversion and microbiome composition in lactate-based chain elongation from D- and L-lactate substrates
Posted on 2021-03-23
GTEx (Genotype-Tissue Expression) data normalized
Posted on 2015-10-26
Data underlying the publication: Phytophthora pathogens exploit slicing action for host invasion
Posted on 2021-03-22
Data underlying the publication: Phytophthora pathogens exploit slicing action for host invasion
Posted on 2021-03-17
Data underlying the publication: Stabilisation of the fatty acid decarboxylase from Chlorella variabilis by caprylic acid
Posted on 2023-03-02
Computational code underlying the publication “Engineered patterns of Notch ligands Jag1 and Dll4 elicit differential spatial control of endothelial sprouting”
Posted on 2022-05-06
Actin Transport - Raw data
Posted on 2021-11-08
Microscopy data quantification of dead and alive yeast cells after 24 hours in different Gal concentrations for the mutants dbem1, dbem1dbem3 and wild type using the pGal-CDC42..
Posted on 2020-09-16
Actin Transport - Optical tweezer force measurements
Posted on 2021-11-08
A TXT file of genes to probe sets mapping for 70,632 genes recognized by the KM-plotter and expression of ACTL6A and N1IC in breast cancer and normal tissues
Posted on 2021-09-22
Simulated RNA-seq data of Homo sapiens and Mus musculus
Posted on 2019-03-25
Raw data for the paper: Biphasic biocatalysis using a CO2-switchable Pickering emulsion
Posted on 2019-11-28
Supplementary data to the publication: What’s wrong with SwYG? Reaching the limits of the Saccharomyces cerevisiae molecular and analytical toolbox
Posted on 2021-12-01
Software for 3D particle averaging of SMLM data
Posted on 2021-02-09
Data presented in the paper "Uptake kinetics and storage capacity of dissolved inorganic phosphorus and corresponding dissolved inorganic nitrate uptake in saccharina latissma and laminaria digitata (phaeophyceae)"
Posted on 2019-02-04
Data from: X-Ray Diffraction of Iron Containing Samples: the Importance of a Suitable Configuration
Posted on 2018-09-25
Data underlying the publication: The B. subtilis Rok protein is an atypical H-NS-like protein irresponsive to physico-chemical cues
Posted on 2022-11-23
Supplementary material for the manuscript 'Regulation mechanism of Hanshi Zufei formula in COVID-19 Identification of a network pharmacology analysis'
Posted on 2021-05-03
Single-Molecule Localization Microscopy (SMLM) 3D datasets
Posted on 2021-02-09
Data underlying research on expression of heterologous molybdenum-cofactor-biosynthesis and nitrate-assimilation genes enables nitrate utilization by Saccharomyces cerevisiae
Posted on 2020-12-02
Data underlying the publication: "Mechanosensitivity of Jagged–Notch signaling can induce a switch-type behavior in vascular homeostasis"
Posted on 2020-05-26
Data from the research of Buyang Huanwu Decoction fraction attenuates oxidative stress damage via the SIRT1/FoxO1/PGC-1α route and the screening of neuroprotective components by cell membrane affinity chromatography.
Posted on 2020-06-09
Protein function prediction using pre-trained ELMO embeddings
Posted on 2020-02-04
Analysis results of the paper baseLess: Lightweight detection of sequences in raw MinION data
Posted on 2022-07-18
Analysis results of the paper baseLess: Lightweight detection of sequences in raw MinION data
Posted on 2022-07-21
Data underlying the research to a: Prognostic model based on six feature genes of intestinal flora subtypes predicts survival in colon cancer
Posted on 2022-09-14
Data underlying the research to a: Prognostic model based on six feature genes of intestinal flora subtypes predicts survival in colon cancer
Posted on 2022-06-08
Therapeutic Effects of Cordycepin on Monocrotaline-induced Pulmonary Arterial Hypertension in Rats via cGMP/PKG/PPAR-γ Signaling Pathway
Posted on 2022-08-22
Cordycepin can improve Pulmonary Arterial Hypertension in Rats via cGMP/PKG/PPAR-γ Signaling Pathway
Posted on 2022-11-14
Cordycepin can improve Pulmonary Arterial Hypertension in Rats via P53-P21 Signaling Pathway
Posted on 2023-02-01
Data underlying the publication: Optimization of negative stage bias potential for faster imaging in large-scale electron microscopy
Posted on 2022-09-05
Data underlying the publication: Optimization of negative stage bias potential for faster imaging in large-scale electron microscopy
Posted on 2022-04-20
Lane-optimization-2020
Posted on 2020-09-07
Lane-optimization-2020
Posted on 2020-12-17
Data underlying the publication: Spectral Diversity of Photosystem I from Flowering Plants
Posted on 2022-10-21
Data underlying the publication: An alginate-confined peroxygenase-CLEA for styrene epoxidation
Posted on 2023-03-02
Dataset proteomics: Analysis of change in protein expression in Saccharomyces cerevisiae upon shift from glucose chemostat to feast/famine regime
Posted on 2022-01-28
Integrating Network Pharmacology and Experimental Verification to Explore the Pharmacological Mechanisms of Cordycepin Against Pulmonary Arterial Hypertension
Posted on 2022-08-22
Data underlying the research of Microbial synthesis of polyhydroxybutyrate in Escherichia coli: a systematic approach using thermodynamics and flux balance analysis studying different synthesis routes
Posted on 2020-08-20
Data underlying the research: Identification of potential hub genes and therapeutic drugs in ovarian cancer via bioinformatics analysis
Posted on 2023-03-16
Data underlying the research on binding of archaeal histones HMfA and HMfB to DNA.
Posted on 2020-11-27
Human monocytes exposed to conditioned medium of OCI-Ly3 cell line
Posted on 2019-04-17
Data underlying the publication: “Nucleotide binding halts diffusion of the eukaryotic replicative helicase during activation”
Posted on 2023-02-03
Data from the paper An actin mechanostat ensures hyphal tip sharpness in Phytophthora infestans to facilitate host entry.
Posted on 2022-04-04
Data underlying the publication: A cryogenic, coincident fluorescence, electron and ion beam microscope
Posted on 2022-11-04
Fluorescence microscopy, image analysis and quantitative PCR data underlying the publication “Engineered patterns of Notch ligands Jag1 and Dll4 elicit differential spatial control of endothelial sprouting”
Posted on 2022-05-06
Dataset proteomics: Analysis of change in protein expression in Saccharomyces cerevisiae upon shift from chemostat to feast/famine regime for different sugar substrates
Posted on 2023-02-28
Data underlying the publication: Fast bioluminescent nucleic acid detection using one-pot isothermal amplification and dCas9-based split luciferase complementation
Posted on 2022-11-25
Data supporting the paper "HI-NESS: A family of genetically encoded DNA labels based on a bacterial nucleoid-associated protein"
Posted on 2021-10-12
Matlab tools for analysing cell-curvature interactions, used in the publication "Emergent collective organization of bone cells in complex curvature fields".
Posted on 2023-01-19
Data from: Differential immunomodulation of porcine bone marrow derived dendritic cells by E. coli Nissle 1917 and β-glucans
Posted on 2020-05-28
Supplementary information to: Simpler is not always better: transplanting the Yarrowia lipolytica glycolytic pathway into Saccharomyces cerevisiae reveals essential synergetic regulatory mechanisms
Posted on 2022-03-01
Dataset metabolomics: Measurements of extracellular sugars and intracellular central carbon metabolites in Saccharomyces cerevisiae under steady-state chemostat and feast/famine regimes with different sugar substrates
Posted on 2023-02-28
Data underlying the Research on Anti-CD79b/CD3 Bispecific Antibody Enhances Anti-tumor Effects of CAR19-T Cells in B-cell Lymphoma
Posted on 2022-03-25
Data underlying the publication: Novel anti-repression mechanism of H-NS proteins by a phage protein
Posted on 2021-08-03
Data underlying the chapter: Peroxygenase-promoted enzymatic cascades for the valorisation of fatty acids
Posted on 2023-05-22
Data underlying the publication: Specific DNA binding of archaeal histones HMfA and HMfB
Posted on 2023-04-03
Data underlying the publication: Specific DNA binding of archaeal histones HMfA and HMfB
Posted on 2023-04-03
Supplemental files for 'Cell Chromatography-Based Screening of the Active Components in Buyang Huanwu Decoction Promoting Axonal Regeneration'
Posted on 2020-04-02
Data from: Impact of Yeast-Derived β-Glucans on the Porcine Gut Microbiota and Immune System in Early Life
Posted on 2020-11-10
LocScale test data
Posted on 2022-06-24
Python notebook to generate Figure 3 Panel C from: "Adaptability and evolution of the cell polarization machinery in budding yeast"
Posted on 2020-09-16
Data underlying the publication "Vimentin regulates Notch signaling strength and arterial remodeling in response to hemodynamic stress"
Posted on 2020-09-10
Supplementary material for the manuscript 'Identification of COVID-19 and dengue host factor interaction networks based on integrative bioinformatics analyses'
Posted on 2021-06-14
Matlab scripts and python notebook to analyze the experiment: Yeast population growth in different galactose concentrations
Posted on 2020-10-05
Data presented in the paper 'Uptake kinetics and storage capacity of dissolved inorganic phosphorus and corresponding N:P dynamics in Ulva lactuca (Chlorophyta)'
Posted on 2018-05-31
Data accompanying the research on Effect of resveratrol on intestinal tight junction proteins and the gut microbiome in high-fat diet-fed insulin resistant mice
Posted on 2020-02-06
Data underlying the research of "Microbial diversity and fermentation data of goat intestine”
Posted on 2019-10-29
Python notebook to generate the cell sizes changes across yeast mutants (Figure 3 Panel D from paper: "Adaptability and evolution of the cell polarization machinery in budding yeast")
Posted on 2020-09-16
Actin Transport - Simulation data and scripts
Posted on 2021-11-08
Arabidopsis thaliana wild-type RNA-seq
Posted on 2019-04-17
Neutrophils and macrophage cell count in the gut area of zebrafish larvae treated with antibiotics or saponin or a combination of treatments
Posted on 2019-12-02
Supporting dataset for "Global correction of optical distortions in single-molecule microscopy using Zernike polynomial gradients"
Posted on 2021-12-07
Data underlying the publication: Integrated Array Tomography for 3D Correlative Light and Electron Microscopy
Posted on 2022-09-05
Data underlying the publication: Integrated Array Tomography for 3D Correlative Light and Electron Microscopy
Posted on 2022-04-20
Data underlying the publication "Notch signaling regulates strain-mediated phenotypic switching of vascular smooth muscle cells"
Posted on 2022-07-21
MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"
Posted on 2022-01-28
Data underlying the publication "A biomimetic microfluidic model to study signalling between endothelial and vascular smooth muscle cells under hemodynamic conditions"
Posted on 2020-09-02
Data underlying the publication: Hydrodynamic shear dissipation and transmission in lipid bilayers
Posted on 2021-05-06
Data underlying the research of Direct observation of independently moving replisomes in Escherichia coli
Posted on 2020-05-17
Data underlying the publication: Application of liquid-infused membranes to mitigate biofouling
Posted on 2021-03-18
STEM images of filamentous proteins for mass mapping
Posted on 2019-12-09
Data underlying the publication: "Shear stress induces expression, intracellular reorganization and enhanced Notch activation potential of Jagged1”
Posted on 2020-05-06
Figures of 'Cell Chromatography-Based Screening of the Active Components in Buyang Huanwu Decoction Promoting Axonal Regeneration'
Posted on 2020-04-02
Data related to Chemo-mechanical Diffusion Waves Orchestrate Collective Dynamics of Immune Cell Podosomes
Posted on 2023-05-23