The doi above is for this specific version of this dataset, which is currently the latest. Newer versions may be published in the future. For a link that will always point to the latest version, please use
doi: 10.4121/6c07e4bb-96f1-4ee0-88ef-6978bda27e5d

Hu, Yimin; Schwab, Samuel; Deiss, Silvia; Escudeiro, Pedro; van Heesch, Thor et. al. (2024): Data underlying the publication: Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. Version 2. 4TU.ResearchData. dataset. https://doi.org/10.4121/6c07e4bb-96f1-4ee0-88ef-6978bda27e5d.v2

Dataset

x choose version: version 1 - 2023-11-07

• Physical Chemistry (incl. Structural)
• Microbiology
• Biochemistry and Cell Biology
• Biological Sciences
• Chemical Sciences

Bacterial chromatin, Bdellovibrio bacteriovorus, DNA bending, HBb, Histones, Nucleoid associated proteins

CC BY 4.0

RefWorks, BibTeX, Reference Manager, Endnote, DataCite, NLM, DC, CFF

by Yimin Hu, Samuel Schwab, Silvia Deiss, Pedro Escudeiro, Thor van Heesch, Joe D. Joiner, Jocelyne Vreede, Marcus D. Hartmann, Andrei N. Lupas, Birte Hernandez Alvarez, Vikram Alva, Remus T. Dame

The research objective was to study how histone HBb from Bdellovibrio bacteriovorus bind and structures DNA. We have studied this with electrophoretic mobility shift assays, micrococcal nuclease assays, DNA topology assays, ligase-mediated circularisation, DAP-seq, tethered particle motion (TPM), X-ray crystallography, and molecular dynamics (MD) simulations. This dataset contains the raw data of obtained root mean squared displacement (TPM), the raw data of the MD simulations, videos of the MD simulations, and the clustering data of the MD simulations .

• 2023-11-07 first online

• 2024-04-10 published, posted

4TU.ResearchData

.xlsx, .mp4, .zip, and related README .text files

Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending

• https://doi.org/10.1101/2023.02.26.530074

Department of Protein Evolution, Max Planck Institute for Biology Tübingen;
Interfaculty Institute of Biochemistry, University of Tübingen;
Leiden Institute of Chemistry, Leiden University
Van ’t Hoff Institute for Molecular Sciences, University of Amsterdam