Biological Sciences

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Advancing Resilience Measures for Vegetated Coastline (ARM4VEG) , Guyana
Posted on 2022-01-11
Distribution and diversity of benthic macroinvertebrates in the selected Myristica swamps of Kulathupuzha and Shendurney
Posted on 2025-01-20
Data underlying the publication: Induced intra- and intermolecular template switching as a therapeutic mechanism against RNA viruses
Posted on 2021-10-26
Cross-linkers at growing microtubule ends generate forces that drive actin transport
Posted on 2021-11-08
PhD Thesis - Ecophysiology of N2O-emitting microbial communities
Posted on 2024-11-08
ter Hofstede (2022) Offshore wind farms contribute to epibenthic biodiversity in the North Sea
Posted on 2024-02-05
UNESCO-IHE collection
Posted on 2014-04-08
Datasets for evaluating FastqPuri and other RNA sequencing pre-processing tools.
Posted on 2019-04-16
Experimental raw data from: "Adaptability and evolution of the cell polarization machinery in budding yeast" (doi: https://doi.org/10.1101/2020.09.09.290510)
Posted on 2020-09-16
Data underlying the dissertation: Engineering nature-inclusive marine infrastructure, with an emphasis on flat oyster reef development at offshore wind farms in the Southern North Sea.
Posted on 2024-05-20
Pterostilbene derived microbial tryptophan against Salmonella infection by regulating host gut flora
Posted on 2024-07-25
Data underlying the PhD thesis: “Finding light in the darkness”
Posted on 2025-03-10
High-throughput single molecule microscopy with adaptable spatial resolution using exchangeable oligonucleotide labels
Posted on 2025-03-11
Protein sequencing raw data
Posted on 2024-05-19
Pterostilbene derived microbial tryptophan against Salmonella infection by regulating host gut flora
Posted on 2024-07-25
Protein sequencing raw data
Posted on 2024-05-19
Multifunctional drug delivery systems combined with trametinib reverses multidrug resistance in ovarian and colorectal cancer
Posted on 2025-03-14

All datasets

Data and code underlying the publication: Overcoming Selection Bias in Synthetic Lethality Prediction
Posted on 2025-02-18
Data and code underlying the publication: MUSICiAn: Genome-wide Identification of Genes Involved in DNA Repair via Control-Free Mutational Spectra Analysis
Posted on 2025-02-18
Data associated with the article "A spatiotemporal framework to assess the bio-geomorphic interplay of saltmarsh vegetation and tidal emergence (Western Scheldt estuary)"
Posted on 2024-12-23
Data underlying the publication: MOSAIC: a highly efficient, one-step recombineering approach to plasmid editing and diversification
Posted on 2025-02-03
Data underlying the publication: Emerging trade-offs in saltmarsh ecosystem services under sea-level rise
Posted on 2025-04-22
Microscopy raw and processed data to measure cell size, cell death and multi-nucleated ratio in yeast cells.
Posted on 2025-02-11
Raw data underlying the publication: High-throughput single molecule microscopy with adaptable spatial resolution using exchangeable oligonucleotide labels
Posted on 2025-04-03
Data underlying the publication: Phosphorylation changes SARS-CoV-2 nucleocapsid protein's structural dynamics and its interaction with RNA
Posted on 2025-03-28
Data underlying chapter 3 of PhD thesis: Building the genome of a minimal synthetic cell
Posted on 2025-03-27
Data underlying the publication titled: "Cooperator intermixing is an effective competitive strategy against cheaters"
Posted on 2025-01-31
Data underlying the publication: Phosphorylation-induced structural dynamics of SARS-CoV-2 nucleocapsid protein
Posted on 2024-11-08
Datasets for the dissertation "Leveraging Data in Algorithm Design"
Posted on 2025-02-21
Data for publication: Metagenomic analysis of antibiotic resistance across the wastewater process
Posted on 2024-12-09
Data and code underlying the publication: ELISL: Early-Late Integrated Synthetic Lethality Prediction in Cancer
Posted on 2024-11-25
Data and code underlying the publication: X-CRISP: Domain-Adaptable and Interpretable CRISPR Repair Outcome Prediction
Posted on 2025-02-18
Population growth rate data and scripts concerning the publication:"Redundancy and the role of protein copy numbers in the cell polarization machinery of budding yeast"experiments
Posted on 2025-02-11
Shotgun mass spectrometry raw dataset on budding yeast cells
Posted on 2025-02-11
Data underlying the publication: Strip cropping in organic agriculture results in 15% higher ground beetle richness and 30% higher activity density than monocultures
Posted on 2025-04-03
Data underlying the publication: Influence of diet on mating behaviour in the black soldier fly (Hermetia illucens).
Posted on 2024-11-28
Data for manuscript: Water motion influences carbon-use strategies of kelp forest assemblages and defines responses of macroalgae to ocean acidification
Posted on 2023-12-14
Data underlying the publication: Plastic retention in rivers increased by trapping and tidal dynamics
Posted on 2023-05-08
Data underlying the publication: Strip cropping designed for maintaining productivity increases ground beetle biodiversity
Posted on 2024-07-31
Outreach and Engagement Materials: Traditional Adhesives of Zambia
Posted on 2024-02-09
Data underlying the research of assessment of genetic diversity among wild mushroom strains using ITS gene and Molecular markers.
Posted on 2025-02-06
Data belonging to the paper: Leopard density and interspecific spatiotemporal interactions in a hyena-dominated landscape
Posted on 2023-04-14
Data underlying the publication 'Changes in appearance during the spoilage process of fruits and vegetables: Implications for consumer use and disposal'
Posted on 2024-02-21
Data underlying the publication: MOSAIC: a highly efficient, one-step recombineering approach to plasmid editing and diversification
Posted on 2024-09-24
Spatially explicit environmental variables at 25m resolution for spatial modelling in the Netherlands
Posted on 2024-02-13
Data underlying the publication: MOSAIC: a highly efficient, one-step recombineering approach to plasmid editing and diversification
Posted on 2024-03-25
BIS-4D: Maps of soil properties and their uncertainties at 25 m resolution in the Netherlands
Posted on 2024-01-29
Spatially explicit environmental variables at 25m resolution for spatial modelling in the Netherlands
Posted on 2024-01-29
Salmonella surveillance data for Israeli poultry farms during 2017-2019
Posted on 2023-09-08
Dataset of scientific literature on Mozambican mangroves from 1962 to 2023
Posted on 2025-04-15
Code underlying the publication: Poaching pressure on African rhinos is still at all-time high
Posted on 2024-06-25
Data from chapter 5 of the thesis 'Herbivores shape the seascape'
Posted on 2024-02-01
Code underlying the publication: Poaching pressure on African rhinos is still at all-time high
Posted on 2024-02-16
Data of manuscript Blood-perfused Vessels-on-Chips stimulated with patient plasma recapitulate endothelial activation and microthrombosis in COVID-19
Posted on 2024-09-17
Dataset and codes underlying "The younger flagellum sets the beat for C. reinhardtii"
Posted on 2024-05-15
Transcriptomic analysis of Streptococcus suis Small Colony variants (SCVs) immune to Cas9-mediated genome editing
Posted on 2023-07-26
Data from: Early detection of phytophthora using hyperspectral imaging pot-tuber experiment
Posted on 2023-05-24
Supplementary data for the publication: Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding
Posted on 2023-09-04
Data belonging to the publication '500 million years of foraminiferal calcification'
Posted on 2023-05-24
Supplementary materials for PhD thesis: Comparative Genomics and Trait Evolution in Lettuce, its Wild Relatives and the Asteraceae
Posted on 2025-02-28
Scripts and data for the paper: gsQTL: Associating genetic risk variants with gene sets by exploiting their shared variability
Posted on 2024-10-15
Illumina short-read genome sequencing of knockout mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system
Posted on 2023-08-25
Data underlying the publication: Settlement success of European flat oyster (Ostrea edulis) on different types of hard substrate to support reef development in offshore wind farms.
Posted on 2024-02-05
Data underlying the publication: Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions - Roodmus_image_processing
Posted on 2024-10-14
Data underlying the publication: Predicting potato plant vigor from the seed tuber properties
Posted on 2024-10-29
Dataset pertaining to the paper "Tunable chitosan-alginate capsules for a controlled release of crystallisation inhibitors in mortars"
Posted on 2024-05-21
Data from "Pleiotropy drives evolutionary repair of the responsiveness of polarized cell growth to environmental cues"
Posted on 2023-07-04
Population growth rate data and scripts concerning the publication:"Redundancy and the role of protein copy numbers in the cell polarization machinery of budding yeast"experiments
Posted on 2023-07-19
Data accompanying the publication "CTCF is a DNA-tension-dependent barrier to cohesin-mediated loop extrusion"
Posted on 2024-01-26
Data underlying the publication: Imaging Flow Cytometry for High-Throughput Phenotyping of Synthetic Cells
Posted on 2023-12-11
Data underlying the publication: Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending
Posted on 2023-11-07
Microscopy raw and processed data to measure cell size, cell death and multi-nucleated ratio in yeast cells.
Posted on 2023-07-17
Data accompanying the preprint "All eukaryotic SMC proteins induce a twist of -0.6 at each DNA-loop-extrusion step"
Posted on 2024-01-26
Data underlying the publication: Intraspecies variation offers potentials to improve white rot fungi for increasing degradability of lignocellulose for ruminants
Posted on 2023-11-07
Software supporting: Analysis of natural variation in photosynthesis in a panel of Brassicaceae species
Posted on 2023-08-25
Supplementary material Chapter 4 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"
Posted on 2024-02-01
Supplementary material Chapter 5 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"
Posted on 2024-02-01
Supplementary information: Analysis of natural variation in photosynthesis in a panel of Brassicaceae species
Posted on 2023-08-31
Oxford Nanopore long-read genome sequencing of mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system
Posted on 2023-07-26
Data underlying the study on Engineering Saccharomyces cerevisiae for fast vitamin-independent aerobic growth
Posted on 2023-09-27
mm-Wave FMCW Radar Vital Sign Monitoring Dataset: Diverse Physiological Scenarios
Posted on 2024-04-05
Supplementary material Chapter 5 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"
Posted on 2024-02-01
Dataset: Structural, functional and evolutionary characterisation of genes in Lactuca sp. reference genomes in the context of eudicots
Posted on 2024-12-10
Data belonging to the research on Application of weighted gene co-expression network analysis to explore the targets of treadmill training in rats with spinal cord injury
Posted on 2023-07-10
Data underlying: Expansion Microscopy Resolves the Thylakoid Structure of Spinach
Posted on 2023-11-02
Data underlying the publication: Genomic analysis of Caldalkalibacillus thermarum TA2.A1 reveals aerobic alkaliphilic metabolism and evolutionary hallmarks linking alkaliphilic bacteria and plant life
Posted on 2023-09-29
Genome assembly and annotation files underlying the publication: The genome of Lupinus mutabilis: evolution and genetics of an emerging bio-based crop
Posted on 2024-03-20
Data underlying the paper: Planktonic primary production in the western Dutch Wadden Sea
Posted on 2020-10-30
Supplementary data for the paper: Spatial variability in macrofaunal diet composition and grazing pressure on microphytobenthos in intertidal areas
Posted on 2021-01-21
Description of data management practices for SANDBOX research data
Posted on 2022-05-23
Data underlying the publication: Flow and wake length downstream of live submerged vegetation patches: how do different species and patch configurations create sheltering in stressful habitats?
Posted on 2022-03-17
Supplementary material A: climatic information used to create BrazilClim
Posted on 2021-07-16
BrazilClim primary and bioclimatic surfaces
Posted on 2021-07-19
Data underlying the publication: ‘Effects of E. coli Nissle 1917 on the Porcine Gut Microbiota and Immune System in Early Life’
Posted on 2022-02-09
Data for "Potato tuber origin and microbial composition determines resistance against soft rot Pectobacteriaceae"
Posted on 2022-03-01
Data of two sites in Somalia underlying the paper: Multistability of model and real dryland ecosystems through spatial self-organization
Posted on 2021-10-28
Supplementary material B: Comparisons between the climatic data measured on-field and the predicted ones
Posted on 2021-07-16
Data on the geographical distribution of Mimosa bimucronata in China
Posted on 2023-02-02
Supplementary material: Sulfidogenic bacteria enriched from deep anoxic Black Sea sediment and the description of Desulfopila canfieldii sp. nov.
Posted on 2020-12-15
Data underlying the publication: “Nucleotide binding halts diffusion of the eukaryotic replicative helicase during activation”
Posted on 2023-02-03
Data from the paper An actin mechanostat ensures hyphal tip sharpness in Phytophthora infestans to facilitate host entry.
Posted on 2022-04-04
Data underlying the publication: Mapping recombination landscape and basidial spore number in the button mushroom Agaricus bisporus
Posted on 2021-05-28
Data underlying the publication: Integrated Array Tomography for 3D Correlative Light and Electron Microscopy
Posted on 2022-09-05
Data underlying the publication: Integrated Array Tomography for 3D Correlative Light and Electron Microscopy
Posted on 2022-04-20
Data & scripts underlying the publication: Elevated micro-topography boosts growth rates in Salicornia procumbens by amplifying a tidally driven oxygen pump: implications for natural recruitment and restoration
Posted on 2022-05-23
Data underlying the publication: The tomato cytochrome P450 CYP712G1 catalyzes the double oxidation of orobanchol en route to the rhizosphere signaling strigolactone, solanacol
Posted on 2022-05-25
Data underlying the article: Pan-cancer in silico analysis of somatic mutations in G-protein coupled receptors: The effect of evolutionary conservation and natural variance
Posted on 2021-10-26
Data underlying the publication "Notch signaling regulates strain-mediated phenotypic switching of vascular smooth muscle cells"
Posted on 2022-07-21
MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"
Posted on 2022-01-28
Data underlying the publication: Beetroot and Spinach Seed Microbiomes Can Suppress Pythium ultimum Infection; Results from a Large-Scale Screening
Posted on 2022-07-29
Data underlying the publication: Beetroot and Spinach Seed Microbiomes Can Suppress Pythium ultimum Infection; Results from a Large-Scale Screening
Posted on 2022-07-10
Data of the study in Selection of suitable lily cultivars by using needle agroinfiltration for blue flower production
Posted on 2022-08-02
Identification of hub genes and small molecule therapeutic drugs related to simple steatosis with secondary analysis of existing microarray data
Posted on 2021-10-13
Data underlying the Research on the Identification of potential biomarkers of septic shock based on pathway analysis and immune-related transcriptome analysis
Posted on 2022-03-22
Data underlying the publication: "Identifying trait-based tolerance to sediment dynamics during seedling establishment across eight mangrove species"
Posted on 2022-08-15
Data underlying the Research on the Identification of potential biomarkers of septic shock based on pathway analysis and immune-related transcriptome analysis
Posted on 2022-05-20
Data of the PhD thesis "Escherichia coli metabolism under dynamic conditions: The tales of substrate hunting"
Posted on 2020-07-10