MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"

doi: 10.4121/19074791.v1
The doi above is for this specific version of this dataset, which is currently the latest. Newer versions may be published in the future. For a link that will always point to the latest version, please use
doi: 10.4121/19074791
Datacite citation style:
Koen Verhagen; Eerden, Siem; Sikkema, Baukje; Wahl, Aljoscha (2022): MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae". Version 1. 4TU.ResearchData. software. https://doi.org/10.4121/19074791.v1
Other citation styles (APA, Harvard, MLA, Vancouver, Chicago, IEEE) available at Datacite
Software
MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"
Contains scripts for:
- Converting proteome datasets to the model proteome allocation format.
- Generating optimized proteomes for both steady-state and dynamic (feast/famine) conditions under user-specified conditions.
- Determining the overcapacity present in proteome provided as input under user-specified conditions.
history
  • 2022-01-28 first online, published, posted
publisher
4TU.ResearchData
format
MATLAB scripts (.m), MATLAB data (.mat) and Excel (.xlsx) files
funding
  • NWO Building Blocks of Life 737.016.001
organizations
Delft University of Technology, Faculty of Applied Sciences, Department of Biotechnology

DATA

files (1)