%0 Computer Program %A Verhagen, Koen %A Eerden, Siem %A Sikkema, Baukje %A Wahl, Aljoscha %D 2022 %T MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae" %U https://data.4tu.nl/articles/software/MATLAB_scripts_belonging_to_the_paper_Predicting_metabolic_adaptation_under_dynamic_substrate_conditions_using_a_resource_dependent_kinetic_model_A_case_study_using_Saccharomyces_cerevisiae_/19074791/1 %R 10.4121/19074791.v1 %K Kinetic Modeling %K proteome allocation model %K resource allocation model %K MATLAB scripts %K Proteome adaptation %K Saccharomyces cerevisiae %K Dynamic conditions %K feast/famine %X MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"
Contains scripts for:
- Converting proteome datasets to the model proteome allocation format.
- Generating optimized proteomes for both steady-state and dynamic (feast/famine) conditions under user-specified conditions.
- Determining the overcapacity present in proteome provided as input under user-specified conditions.
%I 4TU.ResearchData