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Microbiology

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Data underlying the publication: Induced intra- and intermolecular template switching as a therapeutic mechanism against RNA viruses
Posted on 2021-10-26
PhD Thesis - Ecophysiology of N2O-emitting microbial communities
Posted on 2024-11-08
Experimental raw data from: "Adaptability and evolution of the cell polarization machinery in budding yeast" (doi: https://doi.org/10.1101/2020.09.09.290510)
Posted on 2020-09-16
Pterostilbene derived microbial tryptophan against Salmonella infection by regulating host gut flora
Posted on 2024-07-25
Pterostilbene derived microbial tryptophan against Salmonella infection by regulating host gut flora
Posted on 2024-07-25

All datasets

Shotgun mass spectrometry raw dataset on budding yeast cells
Posted on 2025-02-11
Data and code underlying the publication: Emergence of novel SARS-CoV-2 variants in the Netherlands
Posted on 2025-04-07
Data underlying the publication titled: "Cooperator intermixing is an effective competitive strategy against cheaters"
Posted on 2025-01-31
Data underlying chapter 3 of PhD thesis: Building the genome of a minimal synthetic cell
Posted on 2025-03-27
Data underlying chapter 4 of PhD thesis: Building the genome of a minimal synthetic cell
Posted on 2025-03-27
Data for publication: Metagenomic analysis of antibiotic resistance across the wastewater process
Posted on 2024-12-09
Data underlying the publication: MOSAIC: a highly efficient, one-step recombineering approach to plasmid editing and diversification
Posted on 2025-02-03
Population growth rate data and scripts concerning the publication:"Redundancy and the role of protein copy numbers in the cell polarization machinery of budding yeast"experiments
Posted on 2025-02-11
Data underlying the publication: Spinach seed microbiota associated with Globisporangium ultimum disease suppression are culturable and highly prevalent
Posted on 2025-03-31
Data underlying the publication: Phosphorylation-induced structural dynamics of SARS-CoV-2 nucleocapsid protein
Posted on 2024-11-08
Data underlying the publication: Phosphorylation changes SARS-CoV-2 nucleocapsid protein's structural dynamics and its interaction with RNA
Posted on 2025-03-28
Data underlying the publication 'Changes in appearance during the spoilage process of fruits and vegetables: Implications for consumer use and disposal'
Posted on 2024-02-21
Data underlying the publication 'Changes in appearance during the spoilage process of fruits and vegetables: Implications for consumer use and disposal'
Posted on 2024-02-23
Data underlying the publication: MOSAIC: a highly efficient, one-step recombineering approach to plasmid editing and diversification
Posted on 2024-09-24
Data underlying the publication: MOSAIC: a highly efficient, one-step recombineering approach to plasmid editing and diversification
Posted on 2024-03-25
Data for "Potato tuber origin and microbial composition determines resistance against soft rot Pectobacteriaceae"
Posted on 2023-10-04
Data underlying the publication: MOSAIC: a highly efficient, one-step recombineering approach to plasmid editing and diversification
Posted on 2024-03-14
Data underlying the publication: The effect of sulfadiazine in manure on accumulation of sulfonamide resistance genes in freshly consumable plants
Posted on 2025-01-27
Data underlying the article: Physiological and stoichiometric characterization of ethanol-based chain elongation in the absence of short-chain carboxylic acids
Posted on 2023-11-02
Data Underlying the publication: Characterization of extracellular vesicles from Streptococcus thermophilus 065 and their potential capacity as immune modulators
Posted on 2024-10-11
Dataset and codes underlying "The younger flagellum sets the beat for C. reinhardtii"
Posted on 2024-05-15
Data supporting the paper "The environmentally-regulated interplay between local three-dimensional chromatin organisation and transcription of the osmoregulated proVWX operon in Escherichia coli"
Posted on 2023-09-26
Data underlying the publication: Product inhibition and pH affect stoichiometry and kinetics of chain elongating microbial communities in sequencing batch bioreactors - 16S data
Posted on 2023-10-04
Transcriptomic analysis of Streptococcus suis Small Colony variants (SCVs) immune to Cas9-mediated genome editing
Posted on 2023-07-26
Illumina short-read genome sequencing of knockout mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system
Posted on 2023-07-26
Illumina short-read genome sequencing of knockout mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system
Posted on 2023-08-25
Transcriptomic analysis of Streptococcus suis Small Colony variants (SCVs) immune to Cas9-mediated genome editing
Posted on 2023-08-25
Oxford Nanopore long-read genome sequencing of mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system
Posted on 2023-08-25
Data underlying analysis of the microbial community composition in the publication "The impact of processing technology on microbial community composition and functional properties of Beninese maize ogi"
Posted on 2024-04-05
Data from "Pleiotropy drives evolutionary repair of the responsiveness of polarized cell growth to environmental cues"
Posted on 2023-07-04
Supplementary material Chapter 3 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"
Posted on 2024-02-01
Source code for: Assessing the Validity of a Calcifying Oral Biofilm Model as a Suitable Proxy for Dental Calculus
Posted on 2023-05-31
Population growth rate data and scripts concerning the publication:"Redundancy and the role of protein copy numbers in the cell polarization machinery of budding yeast"experiments
Posted on 2023-07-19
Data underlying the publication: Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending
Posted on 2023-11-07
Supplementary data: Assessing the Validity of a Calcifying Oral Biofilm Model as a Suitable Proxy For Dental Calculus
Posted on 2023-06-01
Data underlying the publication "An Efficient Triplex TaqMan Quantitative PCR to Detect a Blackleg-Causing Lineage of Pectobacterium brasiliense in Potato Based on a Pangenome Analysis”
Posted on 2023-08-28
Data underlying the publication: "Temperature status of domestic refrigerators and its effect on the risk of listeriosis from ready-to-eat (RTE) cooked meat products".
Posted on 2024-01-30
Data underlying chapter 5 of PhD thesis: Bacterial chromosome organization by ParB proteins
Posted on 2023-11-23
Data underlying the publication: Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending
Posted on 2024-04-10
Supplementary material Chapter 5 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"
Posted on 2024-06-12
Supplementary material Chapter 3 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"
Posted on 2024-06-12
Supplementary material Chapter 4 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"
Posted on 2024-06-12
Data underlying the publication: SCS causes global protein succinylation contributing to the aflatoxin biosynthesis and development through the STA and Ach1
Posted on 2024-12-19
Data underlying the publication: STA regulates succinylated AflM triggered by SCS to contribute to aflatoxin biosynthesis through the Ach1
Posted on 2025-03-10
Data underlying the publication: STA regulates succinylated AflM triggered by SCS to contribute to aflatoxin biosynthesis through the Ach1
Posted on 2025-03-07
Data underlying the publication: LeuO fine-tunes the virulence attributable to Salmonella pathogenicity island-2 via repressing ssrA transcription in Salmonella Typhimurium
Posted on 2024-11-11
Data underlying the publication: LeuO fine-tunes the virulence attributable to Salmonella pathogenicity island-2 via repressing ssrA transcription in Salmonella Typhimurium
Posted on 2024-11-08
Data underlying the publication: LeuO fine-tunes the virulence attributable to Salmonella pathogenicity island-2 via repressing ssrA transcription in Salmonella Typhimurium
Posted on 2024-10-28
Data underlying analysis of the microbial community composition in the manuscript " The impact of processing technology on microbial community composition and functional properties of Beninese maize ogi"
Posted on 2024-02-07
Supplementary material Chapter 4 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"
Posted on 2024-02-01
Supplementary material Chapter 5 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"
Posted on 2024-02-01
Oxford Nanopore long-read genome sequencing of mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system
Posted on 2023-07-26
Data underlying the study on Engineering Saccharomyces cerevisiae for fast vitamin-independent aerobic growth
Posted on 2023-09-27
Source code for: Assessing the Validity of a Calcifying Oral Biofilm Model as a Suitable Proxy for Dental Calculus
Posted on 2023-05-26
Supplementary material Chapter 5 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"
Posted on 2024-02-01
Data underlying the publication: "Temperature status of domestic refrigerators and its effect on the risk of listeriosis from ready-to-eat (RTE) cooked meat products".
Posted on 2023-11-06
Shotgun mass spectrometry raw dataset on budding yeast cells
Posted on 2023-07-03
Data underlying chapter 5 of PhD thesis: Exploring the potential of yeast mitochondria for synthetic cell research
Posted on 2023-07-10
Data underlying the publication: "Temperature status of domestic refrigerators and its effect on the risk of listeriosis from ready-to-eat (RTE) cooked meat products".
Posted on 2023-12-12
Data underlying the publication: SARS-CoV-2 Delta variant induces severe damages in the nasal cavity from the first day post-infection in the Syrian hamster model
Posted on 2024-01-26
Supplementary material Chapter 4 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"
Posted on 2024-02-01
Data underlying dissertation chapter 5: FT-IR micro-spectroscopy for imaging the extracellular matrix composition in biofilms
Posted on 2024-04-08
Data underlying the chromosome level genome assembly and annotation of Hanseniaspora mollemarum CBS 18055 strain
Posted on 2024-09-25
Data underlying the PhD dissertation: Towards Upscaling of Microbial Electrosynthesis Reactors
Posted on 2024-09-27
Data underlying the publication: Heterogeneity and genomic plasticity of clinical isolates of Acinetobacter baumannii and Acinetobacter nosocomialis from India
Posted on 2024-04-03
Data file underlying research on Understanding microbial syngas fermentation rates
Posted on 2024-09-06
Data underlying the publication "Genetic Mapping of the Root Mycobiota in rice and its Role in Drought Tolerance"
Posted on 2023-05-24
Data underlying chapter 4 of PhD thesis: Bacterial chromosome organization by ParB proteins
Posted on 2023-11-23
Data underlying the publication: Membrane proteome of the thermoalkaliphile Caldalkalibacillus thermarum TA2.A1
Posted on 2023-09-29
Data underlying the publication: Genomic analysis of Caldalkalibacillus thermarum TA2.A1 reveals aerobic alkaliphilic metabolism and evolutionary hallmarks linking alkaliphilic bacteria and plant life
Posted on 2023-09-29
Data underlying the publication: Elevated acyl-PG and menaquinone levels structurally stabilize membranes to minimize proton leakage in Caldalkalibacillus thermarum TA2.A1
Posted on 2024-01-17
Data underlying the pending publication: Quantitative proteomics reveals oxygen-induced adaptations in Caldalkalibacillus thermarum TA2.A1 microaerobic chemostat cultures
Posted on 2024-01-17
Data underlying the pending publication: Quantitative proteomics reveals oxygen-induced adaptations in Caldalkalibacillus thermarum TA2.A1 microaerobic chemostat cultures
Posted on 2023-09-27
Data underlying the publication: Elevated acyl-PG and menaquinone levels structurally stabilize membranes to minimize proton leakage in Caldalkalibacillus thermarum TA2.A1
Posted on 2023-09-27
Data underlying the publication: ‘Effects of E. coli Nissle 1917 on the Porcine Gut Microbiota and Immune System in Early Life’
Posted on 2022-02-09
Data for "Potato tuber origin and microbial composition determines resistance against soft rot Pectobacteriaceae"
Posted on 2022-03-01
Research on epidemiology and losses caused by Bacterial Wilt data
Posted on 2021-08-11
Supplementary material: Transcriptome analysis of fucoidan and L-fucose degradation by Pontiella desulfatans F1(T)
Posted on 2020-12-15
Supplementary material: Sulfidogenic bacteria enriched from deep anoxic Black Sea sediment and the description of Desulfopila canfieldii sp. nov.
Posted on 2020-12-15
Data underlying the publication: Fast bioluminescent nucleic acid detection using one-pot isothermal amplification and dCas9-based split luciferase complementation
Posted on 2022-11-25
Data underlying the publication: Relative contributions of egg-associated and substrate-associated microorganisms to black soldier fly larval performance and microbiota
Posted on 2021-04-20
Data supporting the paper "HI-NESS: A family of genetically encoded DNA labels based on a bacterial nucleoid-associated protein"
Posted on 2021-10-12
Data underlying the publication: Respiratory reoxidation of NADH is a key contributor to high oxygen requirements of oxygen-limited cultures of Ogataea parapolymorpha
Posted on 2022-02-15
Data underlying the study on Engineering class-B vitamin biosynthesis in Saccharomyces cerevisiae
Posted on 2022-12-23
Annotated genomes used in the publication: Machine learning approaches to predict the plant-associated phenotype of Xanthomonas strains
Posted on 2021-07-08
Data underlying the publication: Beetroot and Spinach Seed Microbiomes Can Suppress Pythium ultimum Infection; Results from a Large-Scale Screening
Posted on 2022-08-25
Code and test data set underlying the publication: Characterizing single-molecule dynamics of viral RNA-dependent RNA polymerases with a multiplexed magnetic tweezers
Posted on 2022-08-08
Data from: Substrate-dependent impact of black soldier fly larvae on bacterial community composition in substrate and larval body
Posted on 2022-04-28
Data underlying the publication: Concentration-dependent effects of nickel doping on activated carbon biocathodes
Posted on 2022-03-14
MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"
Posted on 2022-01-28
Data underlying the study on Improving CRISPR-Cas9 mediated genome integration in interspecific hybrid yeasts
Posted on 2023-03-03
Data underlying the publication: Beetroot and Spinach Seed Microbiomes Can Suppress Pythium ultimum Infection; Results from a Large-Scale Screening
Posted on 2022-07-29
Data underlying the publication: Beetroot and Spinach Seed Microbiomes Can Suppress Pythium ultimum Infection; Results from a Large-Scale Screening
Posted on 2022-07-10
Data underlying the publication: Relative contributions of egg-associated and substrate-associated microorganisms to black soldier fly larval performance and microbiota
Posted on 2021-03-23
Raw data of "Microstoma ningshanica ，a new species of Microstoma based on molecular, light and scanning electron microscopy analyses from Shaanxi Province, China"
Posted on 2021-11-17
Data underlying the research to a: Prognostic model based on six feature genes of intestinal flora subtypes predicts survival in colon cancer
Posted on 2022-09-14
Data underlying the research to a: Prognostic model based on six feature genes of intestinal flora subtypes predicts survival in colon cancer
Posted on 2022-06-08
Raw data of "Microstoma ningshanica, a new species of Microstoma based on molecular, light and scanning electron microscopy analyses from Shaanxi Province, China"
Posted on 2021-11-17
Data of the PhD thesis "Escherichia coli metabolism under dynamic conditions: The tales of substrate hunting"
Posted on 2020-07-10
Supplementary data to the publication: What’s wrong with SwYG? Reaching the limits of the Saccharomyces cerevisiae molecular and analytical toolbox
Posted on 2021-12-01