Microbiology

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Experimental raw data from: "Adaptability and evolution of the cell polarization machinery in budding yeast" (doi: https://doi.org/10.1101/2020.09.09.290510)
Posted on 2020-09-16
Data underlying the publication: Induced intra- and intermolecular template switching as a therapeutic mechanism against RNA viruses
Posted on 2021-10-26

All datasets

Supplementary data: Assessing the Validity of a Calcifying Oral Biofilm Model as a Suitable Proxy For Dental Calculus
Posted on 2023-06-01
Data underlying the publication: Concentration-dependent effects of nickel doping on activated carbon biocathodes
Posted on 2022-03-14
Data underlying research on Engineering of molybdenum-cofactor-dependent nitrate assimilation in Yarrowia lipolytica
Posted on 2021-03-18
Nonulosonic acid screening study dataset
Posted on 2020-02-27
The Effects of Chemical Interactions and Culture History on the Colonization of Structured Habitats by Competing Bacterial Populations: Data Set
Posted on 2014-05-03
Data of the PhD thesis "Escherichia coli metabolism under dynamic conditions: The tales of substrate hunting"
Posted on 2020-07-10
Cell size measurements using microscopy for the yeast mutants dbem1, dbem1dbem3 and the wild type using the CDC42-GAL promoter
Posted on 2020-09-16
Data accompanying the research on: Cell size regulation in budding yeast does not depend on linear accumulation of Whi5
Posted on 2020-04-29
Supplementary movies dissertation Albertas Janulevicius
Posted on 2014-08-19
Data from: Bacterial communities in lait caillé, a traditional product of spontaneous fermentation from Senegal
Posted on 2019-04-25
Data underlying the publication: Respiratory reoxidation of NADH is a key contributor to high oxygen requirements of oxygen-limited cultures of Ogataea parapolymorpha
Posted on 2022-02-15
JCVI-syn3A_F_rep3.hic, data supporting the paper: ‘Generating Chromosome Geometries in a Minimal Cell from Cryo-Electron Tomograms and Chromosome Conformation Capture Maps’
Posted on 2021-06-17
Data about Characterization of A Novel Acetyl Xylan Esterase and Its Potential Application on Wheat Straw Utilization
Posted on 2021-01-06
Data about Characterization of A Novel Acetyl Xylan Esterase and Its Potential Application on Wheat Straw Utilization
Posted on 2021-03-12
Data underlying the publication: nZVI impacts substrate conversion and microbiome composition in lactate-based chain elongation from D- and L-lactate substrates
Posted on 2021-03-23
Data underlying the research on Improving industrially relevant phenotypic traits by engineering chromosome copy number in Saccharomyces pastorianus
Posted on 2020-04-21
Microscopy data quantification of dead and alive yeast cells after 24 hours in different Gal concentrations for the mutants dbem1, dbem1dbem3 and wild type using the pGal-CDC42..
Posted on 2020-09-16
Optical Tweezers-based Velocimetry (OTV) measurements of unsteady flow fields around cilia
Posted on 2021-02-15
Data underlying the publication: Induced intra- and intermolecular template switching as a therapeutic mechanism against RNA viruses
Posted on 2021-10-26
Supplementary data to the publication: What’s wrong with SwYG? Reaching the limits of the Saccharomyces cerevisiae molecular and analytical toolbox
Posted on 2021-12-01
Expected and observed genotype complexity in prokaryotes: correlation between 16S-rRNA phylogeny and protein domain content
Posted on 2018-10-24
Scripts from the article "Epidemics as an adaptive driving force determining lifespan setpoints"
Posted on 2020-06-25
Research data for the Ph.D. thesis: "Uncoupling yeast growth and product formation in chemostat and retentostat cultures"
Posted on 2020-05-14
Research on epidemiology and losses caused by Bacterial Wilt data
Posted on 2021-08-11
Supplementary material: Transcriptome analysis of fucoidan and L-fucose degradation by Pontiella desulfatans F1(T)
Posted on 2020-12-15
Data underlying the publication: Relative contributions of egg-associated and substrate-associated microorganisms to black soldier fly larval performance and microbiota
Posted on 2021-04-20
Data underlying the publication: Relative contributions of egg-associated and substrate-associated microorganisms to black soldier fly larval performance and microbiota
Posted on 2021-03-23
Data underlying research on engineering oxygen-independent biotin biosynthesis in Saccharomyces cerevisiae
Posted on 2021-03-26
Data underlying research on expression of heterologous molybdenum-cofactor-biosynthesis and nitrate-assimilation genes enables nitrate utilization by Saccharomyces cerevisiae
Posted on 2020-12-02
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
Posted on 2018-09-26
Data underlying the research of Evolutionary and reverse engineering of single vitamin requirement in Saccharomyces cerevisiae.
Posted on 2020-02-13
Data underlying the publication: Beetroot and Spinach Seed Microbiomes Can Suppress Pythium ultimum Infection; Results from a Large-Scale Screening
Posted on 2022-07-29
Data underlying the publication: Beetroot and Spinach Seed Microbiomes Can Suppress Pythium ultimum Infection; Results from a Large-Scale Screening
Posted on 2022-07-10
Data underlying the publication: Beetroot and Spinach Seed Microbiomes Can Suppress Pythium ultimum Infection; Results from a Large-Scale Screening
Posted on 2022-08-25
Data underlying the research to a: Prognostic model based on six feature genes of intestinal flora subtypes predicts survival in colon cancer
Posted on 2022-09-14
Data underlying the research to a: Prognostic model based on six feature genes of intestinal flora subtypes predicts survival in colon cancer
Posted on 2022-06-08
Raw data of "Microstoma ningshanica ，a new species of Microstoma based on molecular, light and scanning electron microscopy analyses from Shaanxi Province, China"
Posted on 2021-11-17
Raw data of "Microstoma ningshanica, a new species of Microstoma based on molecular, light and scanning electron microscopy analyses from Shaanxi Province, China"
Posted on 2021-11-17
Analyzing Candida albicans enolase with MAbs
Posted on 2021-08-10
Investigation of the location and secretion features of Candida albicans enolase with monoclonal antibodies
Posted on 2022-04-19
Analyzing Candida albicans enolase with MAbs
Posted on 2021-08-11
Data underlying the publication: ‘Effects of E. coli Nissle 1917 on the Porcine Gut Microbiota and Immune System in Early Life’
Posted on 2022-02-09
Supplementary material: Sulfidogenic bacteria enriched from deep anoxic Black Sea sediment and the description of Desulfopila canfieldii sp. nov.
Posted on 2020-12-15
Data underlying the research of Microbial synthesis of polyhydroxybutyrate in Escherichia coli: a systematic approach using thermodynamics and flux balance analysis studying different synthesis routes
Posted on 2020-08-20
Data underlying the research on binding of archaeal histones HMfA and HMfB to DNA.
Posted on 2020-11-27
Data for "Potato tuber origin and microbial composition determines resistance against soft rot Pectobacteriaceae"
Posted on 2022-03-01
Data underlying the publication: Fast bioluminescent nucleic acid detection using one-pot isothermal amplification and dCas9-based split luciferase complementation
Posted on 2022-11-25
Data supporting the paper "HI-NESS: A family of genetically encoded DNA labels based on a bacterial nucleoid-associated protein"
Posted on 2021-10-12
Data underlying the study on Improving CRISPR-Cas9 mediated genome integration in interspecific hybrid yeasts
Posted on 2023-03-03
Supplementary information to: Simpler is not always better: transplanting the Yarrowia lipolytica glycolytic pathway into Saccharomyces cerevisiae reveals essential synergetic regulatory mechanisms
Posted on 2022-03-01
Open source package for Optical Tweezers-based Velocimetry (OTV)
Posted on 2020-08-31
Data underlying the publication: Quantitative physiology and proteomic adaptations of Bifidobacterium breve NRBB57 at near-zero growth rates
Posted on 2023-02-06
Data underlying the manuscript: “Modular, synthetic chromosomes as new tools for large scale engineering of metabolism”
Posted on 2021-11-22
Data underlying the research on Identification of oxygen-independent pathways for pyridine-nucleotide and Coenzyme-A synthesis in anaerobic fungi by expression of candidate genes in yeast.
Posted on 2020-07-02
Statistics of the kinematics of free-swimming microalgae
Posted on 2021-04-30
Data presented in the paper "Marine virus predation by non-host organisms"
Posted on 2020-03-12
Code and test data set underlying the publication: Characterizing single-molecule dynamics of viral RNA-dependent RNA polymerases with a multiplexed magnetic tweezers
Posted on 2022-08-08
Data from: Substrate-dependent impact of black soldier fly larvae on bacterial community composition in substrate and larval body
Posted on 2022-04-28
Data underlying the research of "Microbial diversity and fermentation data of goat intestine”
Posted on 2019-10-29
Annotated genomes used in the publication: Machine learning approaches to predict the plant-associated phenotype of Xanthomonas strains
Posted on 2021-07-08
Data underlying the publication: Lactate metabolism and microbiome composition are affected by nitrogen gas supply in continuous lactate-based chain elongation
Posted on 2021-03-17
Data underlying the publication: Lactate metabolism and microbiome composition are affected by nitrogen gas supply in continuous lactate-based chain elongation
Posted on 2021-03-15
Neutrophils and macrophage cell count in the gut area of zebrafish larvae treated with antibiotics or saponin or a combination of treatments
Posted on 2019-12-02
Data accompanying the research on microbial response to acute dry-rewetting and glyphosate perturbations
Posted on 2020-03-31
MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"
Posted on 2022-01-28
Supplemental data for the publication: A Cross-System Comparison of Bacterial Dark Carbon Fixation in Coastal Sediments
Posted on 2020-03-03
Data underlying the research of Direct observation of independently moving replisomes in Escherichia coli
Posted on 2020-05-17
Data from: Robust sampling and preservation of DNA for microbial community profiling in field experiments
Posted on 2019-04-25
Data underlying the study on Engineering class-B vitamin biosynthesis in Saccharomyces cerevisiae
Posted on 2022-12-23
Data underlying the publication: Bacterial community dynamics and disinfection impact in cooling water systems
Posted on 2020-08-20
Engineering the thermotolerant industrial yeast Kluyveromyces marxianus for anaerobic growth
Posted on 2021-06-10
Dataset for the dissertation: Dynamical Regulation of Growth, Metabolism and Cell Size in E. coli
Posted on 2020-04-07
Source code for: Assessing the Validity of a Calcifying Oral Biofilm Model as a Suitable Proxy for Dental Calculus
Posted on 2023-05-31
Source code for: Assessing the Validity of a Calcifying Oral Biofilm Model as a Suitable Proxy for Dental Calculus
Posted on 2023-05-26
Data underlying the publication "Genetic Mapping of the Root Mycobiota in rice and its Role in Drought Tolerance"
Posted on 2023-05-24