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Data and code underlying the publication: X-CRISP: Domain-Adaptable and Interpretable CRISPR Repair Outcome Prediction
Posted on 2025-02-18
Data and code underlying the publication: MUSICiAn: Genome-wide Identification of Genes Involved in DNA Repair via Control-Free Mutational Spectra Analysis
Posted on 2025-02-18
Data underlying the publication: MOSAIC: a highly efficient, one-step recombineering approach to plasmid editing and diversification
Posted on 2025-02-03
Shotgun mass spectrometry raw dataset on budding yeast cells
Posted on 2025-02-11
Data underlying chapter 3 of PhD thesis: Building the genome of a minimal synthetic cell
Posted on 2025-03-27
Data and code underlying the publication: Overcoming Selection Bias in Synthetic Lethality Prediction
Posted on 2025-02-18
Data underlying the research of assessment of genetic diversity among wild mushroom strains using ITS gene and Molecular markers.
Posted on 2025-02-06
Data underlying the publication: MOSAIC: a highly efficient, one-step recombineering approach to plasmid editing and diversification
Posted on 2024-09-24
Data underlying the publication: MOSAIC: a highly efficient, one-step recombineering approach to plasmid editing and diversification
Posted on 2024-03-25
Transcriptomic analysis of Streptococcus suis Small Colony variants (SCVs) immune to Cas9-mediated genome editing
Posted on 2023-07-26
Supplementary data for the publication: Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding
Posted on 2023-09-04
Supplementary materials for PhD thesis: Comparative Genomics and Trait Evolution in Lettuce, its Wild Relatives and the Asteraceae
Posted on 2025-02-28
Scripts and data for the paper: gsQTL: Associating genetic risk variants with gene sets by exploiting their shared variability
Posted on 2024-10-15
Illumina short-read genome sequencing of knockout mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system
Posted on 2023-08-25
Data from "Pleiotropy drives evolutionary repair of the responsiveness of polarized cell growth to environmental cues"
Posted on 2023-07-04
Supplementary material Chapter 5 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"
Posted on 2024-02-01
Oxford Nanopore long-read genome sequencing of mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system
Posted on 2023-07-26
Data underlying the study on Engineering Saccharomyces cerevisiae for fast vitamin-independent aerobic growth
Posted on 2023-09-27
Supplementary material Chapter 5 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"
Posted on 2024-02-01
Dataset: Structural, functional and evolutionary characterisation of genes in Lactuca sp. reference genomes in the context of eudicots
Posted on 2024-12-10
Data belonging to the research on Application of weighted gene co-expression network analysis to explore the targets of treadmill training in rats with spinal cord injury
Posted on 2023-07-10
Data underlying the publication: Genomic analysis of Caldalkalibacillus thermarum TA2.A1 reveals aerobic alkaliphilic metabolism and evolutionary hallmarks linking alkaliphilic bacteria and plant life
Posted on 2023-09-29
Genome assembly and annotation files underlying the publication: The genome of Lupinus mutabilis: evolution and genetics of an emerging bio-based crop
Posted on 2024-03-20
Supplementary material: Sulfidogenic bacteria enriched from deep anoxic Black Sea sediment and the description of Desulfopila canfieldii sp. nov.
Posted on 2020-12-15
Data underlying the publication: Mapping recombination landscape and basidial spore number in the button mushroom Agaricus bisporus
Posted on 2021-05-28
Data underlying the publication: The tomato cytochrome P450 CYP712G1 catalyzes the double oxidation of orobanchol en route to the rhizosphere signaling strigolactone, solanacol
Posted on 2022-05-25
Data underlying the article: Pan-cancer in silico analysis of somatic mutations in G-protein coupled receptors: The effect of evolutionary conservation and natural variance
Posted on 2021-10-26
Data of the study in Selection of suitable lily cultivars by using needle agroinfiltration for blue flower production
Posted on 2022-08-02
Data underlying the Research on the Identification of potential biomarkers of septic shock based on pathway analysis and immune-related transcriptome analysis
Posted on 2022-03-22
Data underlying the Research on the Identification of potential biomarkers of septic shock based on pathway analysis and immune-related transcriptome analysis
Posted on 2022-05-20
Supplementary Dataset 2 from the paper "Highly differentiated genomic properties underpin the different cell walls of Poaceae and eudicots"
Posted on 2023-02-13
Data underlying the research on methylation level changes of thyroid hormone receptors in human
Posted on 2021-06-17
Dataset underlying the publication: Interleukin 7 receptor T244I polymorphism and the multiple sclerosis susceptibility: a meta-analysis
Posted on 2020-03-12
Supplemental files for the manuscript of 'Development of small InDels in kenaf (Hibiscus cannabinus) based on transcriptome sequences'
Posted on 2018-11-27
MaryGold 7 ecoli simulated metagenome assembly (AMOS bank)
Posted on 2013-11-26
Chemical and population data for Nasonia vitripennnis females collected from the Hoge Veluwe
Posted on 2023-11-10
Data underlying the publication: The effects of thioredoxin peroxidase from Cysticercus cellulosae excretory-secretory antigens on TGF-β signaling pathway and Th17 cells differentiation in Jurkat cells by transcriptomics
Posted on 2023-10-20
Hypersensitive response of Brassica plants against cabbage white butterfly eggs is specifically induced by egg-associated secretions
Posted on 2023-04-03
Data supporting the paper "The environmentally-regulated interplay between local three-dimensional chromatin organisation and transcription of the osmoregulated proVWX operon in Escherichia coli"
Posted on 2023-09-26
Illumina short-read genome sequencing of knockout mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system
Posted on 2023-07-26
Transcriptomic analysis of Streptococcus suis Small Colony variants (SCVs) immune to Cas9-mediated genome editing
Posted on 2023-08-25
Oxford Nanopore long-read genome sequencing of mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system
Posted on 2023-08-25
Supplemental Dataset 1 from the paper "Highly differentiated genomic properties underpin the different cell walls of Poaceae and eudicots"
Posted on 2023-04-21
Data underlying the Research on the Identification of potential biomarkers of septic shock based on pathway analysis and immune-related transcriptome analysis
Posted on 2023-04-20
Supplemental Dataset 2 from the paper "Highly differentiated genomic properties underpin the different cell walls of Poaceae and eudicots"
Posted on 2023-04-21
Shotgun mass spectrometry raw dataset on budding yeast cells
Posted on 2023-07-03
Software supporting: RNA-Seq analysis of Brassicaceae species under different irradiances
Posted on 2023-08-17
Data underlying chapter 5 of PhD thesis: Exploring the potential of yeast mitochondria for synthetic cell research
Posted on 2023-07-10
Data underlying the publication: Mapping recombination landscape and basidial spore number in the button mushroom Agaricus bisporus
Posted on 2021-06-25
Supplementary Dataset 1 from the paper "Highly differentiated genomic properties underpin the different cell walls of Poaceae and eudicots"
Posted on 2023-02-13
Data underlying the Research on the Identification of potential biomarkers of septic shock based on pathway analysis and immune-related transcriptome analysis
Posted on 2023-02-20
Data underlying the Research on the Identification of potential biomarkers of septic shock based on pathway analysis and immune-related transcriptome analysis
Posted on 2022-06-14
Supplementary data to the publication: What’s wrong with SwYG? Reaching the limits of the Saccharomyces cerevisiae molecular and analytical toolbox
Posted on 2021-12-01
Data underlying the publication: "The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool"
Posted on 2021-02-25
Data underlying the publication: "The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool"
Posted on 2021-02-23
Data about Characterization of A Novel Acetyl Xylan Esterase and Its Potential Application on Wheat Straw Utilization
Posted on 2021-01-06
Data about Characterization of A Novel Acetyl Xylan Esterase and Its Potential Application on Wheat Straw Utilization
Posted on 2021-03-12
Data underlying the research on Improving industrially relevant phenotypic traits by engineering chromosome copy number in Saccharomyces pastorianus
Posted on 2020-04-21
Additional data for article "Genome-wide DNA sampling by Ago nuclease from the cyanobacterium Synechococcus elongatus"
Posted on 2019-08-19
Supplementary datasets to publication about Genome wide co-expression analysis of steroid receptors in the mouse brain
Posted on 2015-10-15
Data underlying the publication: MOSAIC: a highly efficient, one-step recombineering approach to plasmid editing and diversification
Posted on 2024-03-14
Supplementary material Chapter 5 of PhD thesis: "To Rebehold the Cell: Natural and Synthetic Cell Cycles Through the Lenses of Macromolecular Motion"
Posted on 2024-06-12
Insect egg-killing: a new front on the evolutionary arms-race between brassicaceous plants and pierid butterflies
Posted on 2023-04-03
Identification of Anoikis-related Diagnostic Markers in Chronic Thromboembolic Pulmonary Hypertension
Posted on 2023-06-07
Complete chloroplast genome sequence of medicinal plant Actaea cimicifuga L.（syn. Cimicifuga foetida L.）
Posted on 2023-03-23
Data supporting the paper "HI-NESS: A family of genetically encoded DNA labels based on a bacterial nucleoid-associated protein"
Posted on 2021-10-12
Data underlying the study on Engineering class-B vitamin biosynthesis in Saccharomyces cerevisiae
Posted on 2022-12-23
Supplementary Dataset 2 from the paper "Syntenic cell wall QTLs as versatile breeding tools: intra-specific allelic variability and predictability of biomass quality loci in target plant species"
Posted on 2023-02-13
Data underlying the publication: "PanTools v3: functional annotation, classification, and phylogenomics "
Posted on 2022-07-04
Supplementary datafiles of - "Genome and transcriptome analysis of the beet armyworm Spodoptera exigua reveals targets for pest control"
Posted on 2022-02-22
Data files used for exploring BRAF mutation-associated gene risk model for predicting the prognosis of melanoma
Posted on 2022-11-14
Supplementary information to: Simpler is not always better: transplanting the Yarrowia lipolytica glycolytic pathway into Saccharomyces cerevisiae reveals essential synergetic regulatory mechanisms
Posted on 2022-03-01
Supplementary Dataset 1 from the paper "Syntenic cell wall QTLs as versatile breeding tools: intra-specific allelic variability and predictability of biomass quality loci in target plant species"
Posted on 2023-02-13
Data underlying research on engineering oxygen-independent biotin biosynthesis in Saccharomyces cerevisiae
Posted on 2021-03-26
Data underlying research on expression of heterologous molybdenum-cofactor-biosynthesis and nitrate-assimilation genes enables nitrate utilization by Saccharomyces cerevisiae
Posted on 2020-12-02
Assessment of genomic variation using molecular markers
Posted on 2021-07-07
Data underlying the research on Identification of oxygen-independent pathways for pyridine-nucleotide and Coenzyme-A synthesis in anaerobic fungi by expression of candidate genes in yeast.
Posted on 2020-07-02
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
Posted on 2018-09-26
Genotyping data MiMe offspring VIGS
Posted on 2019-01-24
Pieris brassicae egg-induced cell death of Brassica nigra is controlled by a single locus containing a cluster of TIR-NBS-LRR receptors
Posted on 2023-04-03
Data underlying the publication "An Efficient Triplex TaqMan Quantitative PCR to Detect a Blackleg-Causing Lineage of Pectobacterium brasiliense in Potato Based on a Pangenome Analysis”
Posted on 2023-08-28
Data underlying the publication "Genetic Mapping of the Root Mycobiota in rice and its Role in Drought Tolerance"
Posted on 2023-05-24
Supplementary material: Transcriptome analysis of fucoidan and L-fucose degradation by Pontiella desulfatans F1(T)
Posted on 2020-12-15
Annotated genomes used in the publication: Machine learning approaches to predict the plant-associated phenotype of Xanthomonas strains
Posted on 2021-07-08
Supplementary datafiles of: "Family dinner: transcriptional plasticity of five Noctuidae (Lepidoptera) feeding on three host plant species"
Posted on 2022-09-12
Supplementary datafiles of - "Expanding the Menu: Are Polyphagy and Gene Family Expansions Linked Across Lepidoptera?
Posted on 2022-02-22
Data underlying the study on Improving CRISPR-Cas9 mediated genome integration in interspecific hybrid yeasts
Posted on 2023-03-03
Analysis results of the paper baseLess: Lightweight detection of sequences in raw MinION data
Posted on 2022-07-18
Identification of Anoikis-related Diagnostic Markers in Chronic Thromboembolic Pulmonary Hypertension
Posted on 2023-02-02
Analysis results of the paper baseLess: Lightweight detection of sequences in raw MinION data
Posted on 2022-07-21
Genotyping data underlying the publication: Investigating the potential of Andean lupin as a lignocellulosic feedstock for Europe: first genome-wide association study on L. mutabilis biomass quality.
Posted on 2022-10-21
Data underlying the manuscript: “Modular, synthetic chromosomes as new tools for large scale engineering of metabolism”
Posted on 2021-11-22
Data underlying research on Engineering of molybdenum-cofactor-dependent nitrate assimilation in Yarrowia lipolytica
Posted on 2021-03-18
Expression data of glycogenic enzymes in high glucose-induced HepG2 cells and key proteins of LKB1/AMPK pathway to explore the role of quercetin and isoquercetin in hepatic gluconeogenesis.
Posted on 2022-01-04
Data underlying the research of Evolutionary and reverse engineering of single vitamin requirement in Saccharomyces cerevisiae.
Posted on 2020-02-13
Genotyping Data Hyperrecombinant offspring VIGS
Posted on 2019-01-24
GTEx (Genotype-Tissue Expression) data normalized
Posted on 2015-10-26
Data and code underlying the publication: Emergence of novel SARS-CoV-2 variants in the Netherlands
Posted on 2025-04-07
Data underlying chapter 4 of PhD thesis: Building the genome of a minimal synthetic cell
Posted on 2025-03-27
Data underlying the publication "Loss of olfaction reduces caterpillar performance and increases susceptibility to a natural enemy"
Posted on 2024-11-22