Data underlying the publication: "PanTools v3: functional annotation, classification, and phylogenomics "

DOI:10.4121/19874485.v1
The DOI displayed above is for this specific version of this dataset, which is currently the latest. Newer versions may be published in the future. For a link that will always point to the latest version, please use
DOI: 10.4121/19874485

Datacite citation style

Eef Jonkheer; Sandra Smit (2022): Data underlying the publication: "PanTools v3: functional annotation, classification, and phylogenomics ". Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/19874485.v1
Other citation styles (APA, Harvard, MLA, Vancouver, Chicago, IEEE) available at Datacite

Dataset

SnakeMake pipeline to reperform the pangenome construction and analyses on seven different datasets from the publication: "PanTools v3: functional annotation, classification, and phylogenomics". Pangenome analysis of Drosophila, Arabidopsis thaliana, Saccharomyces cerevisiae, Pectobacterium and SARS-CoV-2. Demonstration of PanTools' scalability on Homo sapiens and Solanum lycopersicum.


History

  • 2022-07-04 first online, published, posted

Publisher

4TU.ResearchData

Format

FASTA, GFF3, eggNOG-mapper annotation

Funding

  • This research was funded by the Dutch Ministry of Economic Affairs in the Topsector Program ``Horticulture and Starting Materials'' (project number: TU 16022) and its partners (NAK, Naktuinbouw and BKD).

Organizations

Bioinformatics Group, Wageningen University & Research;
Biointeractions and Plant Health, Wageningen University & Research

DATA

Files (4)