Data underlying the publication: "PanTools v3: functional annotation, classification, and phylogenomics "
doi: 10.4121/19874485.v1
The doi above is for this specific version of this dataset, which is currently the latest. Newer versions may be published in the future.
For a link that will always point to the latest version, please use
doi: 10.4121/19874485
doi: 10.4121/19874485
Datacite citation style:
Eef Jonkheer; Sandra Smit (2022): Data underlying the publication: "PanTools v3: functional annotation, classification, and phylogenomics ". Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/19874485.v1
Other citation styles (APA, Harvard, MLA, Vancouver, Chicago, IEEE) available at Datacite
Dataset
categories
licence

SnakeMake pipeline to reperform the pangenome construction and analyses on seven different datasets from the publication: "PanTools v3: functional annotation, classification, and phylogenomics". Pangenome analysis of Drosophila, Arabidopsis thaliana, Saccharomyces cerevisiae, Pectobacterium and SARS-CoV-2. Demonstration of PanTools' scalability on Homo sapiens and Solanum lycopersicum.
history
- 2022-07-04 first online, published, posted
publisher
4TU.ResearchData
format
FASTA, GFF3, eggNOG-mapper annotation
associated peer-reviewed publication
PanTools v3: functional annotation, classification, and phylogenomics
funding
- This research was funded by the Dutch Ministry of Economic Affairs in the Topsector Program ``Horticulture and Starting Materials'' (project number: TU 16022) and its partners (NAK, Naktuinbouw and BKD).
organizations
Bioinformatics Group, Wageningen University & Research;Biointeractions and Plant Health, Wageningen University & Research
DATA
files (4)
-
2,103 bytesMD5:
e91a7b04c50351649f495df759e3cbd9
README.txt -
587,898 bytesMD5:
7f8649ff6dbdfcb4d6911940c05fe187
genome_statistics.xlsx -
793,738 bytesMD5:
60270419a09732b92c0280b0bee79d62
pantools_v3_snakemake_instructions.pdf -
4,863,942,254 bytesMD5:
a73e75d591d0b8e0ce830b12674d4c50
pantools_v3_usecase_data.zip - download all files (zip)
4,865,325,993 bytes unzipped