Data underlying the publication: Mapping recombination landscape and basidial spore number in the button mushroom Agaricus bisporus
Datacite citation style:
Lavrijssen, Brian; Telgerd, Narges Sedaghat; Sonnenberg, Anton S.M.; Patrick Hendrickx (2021): Data underlying the publication: Mapping recombination landscape and basidial spore number in the button mushroom Agaricus bisporus. Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/14695425.v1
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version 2 - 2021-06-25 (latest)
version 1 - 2021-05-28
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2014-2016
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- Raw data of counts of basidial spore numbers in lamellae of 2 varieties of A. bisporus, i.e. var. bisporus and var. burnettii (parents).
The intervarietal hybrid and the intercross of haploid offspring of the intervarietal hybrid. These data sets are used to map QTL of the basidial spore number.
- A selection of 71 haploid offspring of HBT03 that was outcrossed with H39. This set was used to generate 40-50 haploid offspring that was subsequently genotyped to assess crossover positions.
These data were used to QTL map the trait " recombination landscape"
- Genotypes of the intervarietal hybrid HBT03 (var. bisporus H97 x var. burnettii H119p4).
180 homokaryotic single spore isolates (SSIs) were genotyped using 215 SNP's using Kasp genotyping method.
- 71 haploid offspring of the intervarietal hybrid HBT03 were outcrossed with the var. bisporis homokaryon H39.
From each hybrid, 40-50 haploid offspring was genotyped using 4 SNP markers per chromosome:
markers at the chromosome ends, and 2 markers 150-200 kb from chromosome ends ("border" marker).
The intervarietal hybrid and the intercross of haploid offspring of the intervarietal hybrid. These data sets are used to map QTL of the basidial spore number.
- A selection of 71 haploid offspring of HBT03 that was outcrossed with H39. This set was used to generate 40-50 haploid offspring that was subsequently genotyped to assess crossover positions.
These data were used to QTL map the trait " recombination landscape"
- Genotypes of the intervarietal hybrid HBT03 (var. bisporus H97 x var. burnettii H119p4).
180 homokaryotic single spore isolates (SSIs) were genotyped using 215 SNP's using Kasp genotyping method.
- 71 haploid offspring of the intervarietal hybrid HBT03 were outcrossed with the var. bisporis homokaryon H39.
From each hybrid, 40-50 haploid offspring was genotyped using 4 SNP markers per chromosome:
markers at the chromosome ends, and 2 markers 150-200 kb from chromosome ends ("border" marker).
history
- 2021-05-28 first online, published, posted
publisher
4TU.ResearchData
format
txt
xlsx
organizations
Plant Breeding, Wageningen University & Research
DATA
files (9)
- 2,309 bytesMD5:
47e0d4330522a3bc4f5e3c592c6f2bf5
README.txt - 1,750 bytesMD5:
ae27a87bf92d2f7f93c5cf46ec06fe8d
BSN_raw_data.txt - 270,361 bytesMD5:
0b62d760ffaacab41cfd6a035b9fb8ad
BSN_raw_data.xlsx - 1,509 bytesMD5:
de76c0e21cdc97bc3fc940f546d63f9f
Genotypes_F2.txt - 74,291 bytesMD5:
c15c05243272732a59db73423c86418b
Genotypes_F2.xlsx - 157,268 bytesMD5:
a8ff52efd1593e34faca739683cd7d12
HBT03_Genotypes.xlsx - 1,242 bytesMD5:
9bba913e7c99db5beacef79b8ae07bb4
HBT03Genotypes.txt - 2,133 bytesMD5:
2bd2ec67e30202444a9b48cfd6132deb
QTL_input_recombination_landscape.txt - 35,704 bytesMD5:
efa5984199609828490ad584f1e5dcb6
QTL_input_Recombination_landscape.xlsx -
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