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Analysis results of the paper baseLess: Lightweight detection of sequences in raw MinION data

dataset
posted on 21.07.2022, 11:30 authored by Ben Noordijk, Reindert Nijland, Victor J. Carrion, Jos M. Raaijmakers, Dick de RidderDick de Ridder, Carlos de LannoyCarlos de Lannoy

BaseLess reduces your MinION sequencing device to a simple species  detector. As a trade-off, it runs on inexpensive computational hardware  like single-board computers. The baseLess code base can be found here. All data and analysis results described in the paper describing baseLess are stored in this file.

Funding

Vrije Programma of the Foundation for Fundamental Research on Matter under grant number 16SMPS05

History

Publisher

4TU.ResearchData

Format

fast5 Oxford Nanopore Technologies read files, snakemake pipeline scripts, svg image files, csv files

Organizations

Bioinformatics Group, Wageningen University & Research Department of Bionanoscience, Delft University of Technology