Ben Noordijk; Reindert Nijland; Victor J. Carrion; Jos M. Raaijmakers; Dick de Ridder et. al. (2022): Analysis results of the paper baseLess: Lightweight detection of sequences in raw MinION data. Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/20261392.v1

Dataset

x choose version: version 2 - 2022-07-21 (latest)

• Genetics
• Biochemistry and Cell Biology

benchmarking, nanopore sequencing, nucleic acid sequencing, sequence detection

MIT

RefWorks, BibTeX, Reference Manager, Endnote, DataCite, NLM, DC, CFF

by Ben Noordijk , Reindert Nijland , Victor J. Carrion , Jos M. Raaijmakers , Dick de Ridder , WUR Data Librarian

BaseLess reduces your MinION sequencing device to a simple species  detector. As a trade-off, it runs on inexpensive computational hardware  like single-board computers. The baseLess code base can be found _here. All data and analysis results described in the paper describing baseLess are stored in this file.

• 2022-07-18 first online, published, posted

4TU.ResearchData

fast5 Oxford Nanopore Technologies read files, snakemake pipeline scripts, svg image files, csv files

• https://doi.org/10.1101/2022.07.10.499286

• Vrije Programma of the Foundation for Fundamental Research on Matter under grant number 16SMPS05

Bioinformatics Group, Wageningen University and Research;
Department of Bionanoscience, Delft University of Technology