Datasets for evaluating FastqPuri and other RNA sequencing pre-processing tools.

Datacite citation style:
J.C. (Julia) Engelmann (2019): Datasets for evaluating FastqPuri and other RNA sequencing pre-processing tools. Version 1. 4TU.ResearchData. collection. https://doi.org/10.4121/collection:FastqPuri
Other citation styles (APA, Harvard, MLA, Vancouver, Chicago, IEEE) available at Datacite
Collection
The collection consists of RNA sequencing (RNA-seq) datasets in fastq format which were used to evaluate FastqPuri ({https://github.com/jengelmann/FastqPuri/}). FastqPuri is a command line software which evaluates the quality of RNA-seq data, filters low quality and adapter sequences as well as sequence reads from biological contamination. The sequence data originate from samples of two different model organisms, Homo sapiens (human) and Arabidopsis thaliana (thale cress). Another data set was simulated to represent a human sample contaminated with mouse (Mus musculus) RNA.
history
  • 2019-04-16 first online, published, posted
  • 2020-07-17 revised
publisher
4TU.Centre for Research Data