Engelmann, Julia (2019): Simulated RNA-seq data of Homo sapiens and Mus musculus. Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/uuid:f8f12fa1-ea24-4074-a231-89b075d13d28

Usage statistics

Categories

• Other Biological Sciences
• Biochemistry and Cell Biology

Keywords

RNA sequencing simulated data transcriptomics

Licence

CC0

Interoperability

• RO-Crate Metadata

Collection

• Datasets for evaluating FastqPuri and other RNA sequencing pre-processing tools.

Export as...

RefWorks BibTeX Reference Manager Endnote DataCite NLM DC CFF

by Julia Engelmann

This dataset consists of simulated reads of the human and mouse transcriptome. For each transcript as annotated in the respective reference genome (hg19, mm9), 20 reads were simulated using the R package polyester. Base qualities were uniformly sampled from a range of high quality scores. The reads of both organisms were shuffled and written to one file.

History

• 2019-03-25 first online, published, posted

Publisher

4TU.Centre for Research Data

Format

bzip2-compressed fastq file media types: application/x-bzip2, text/plain

References

• https://doi.org/10.1101/480707
• https://github.com/jengelmann/FastqPuri/

Organizations

Netherlands Institute for Sea Research (NIOZ) and Utrecht University