Code and test data set underlying the publication: Characterizing single-molecule dynamics of viral RNA-dependent RNA polymerases with a multiplexed magnetic tweezers
doi:10.4121/19145426.v1
The doi above is for this specific version of this dataset, which is currently the latest. Newer versions may be published in the future.
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doi: 10.4121/19145426
doi: 10.4121/19145426
Datacite citation style:
Kuijpers, Louis; Richard Janissen; Nynke Dekker (2022): Code and test data set underlying the publication: Characterizing single-molecule dynamics of viral RNA-dependent RNA polymerases with a multiplexed magnetic tweezers. Version 1. 4TU.ResearchData. software. https://doi.org/10.4121/19145426.v1
Other citation styles (APA, Harvard, MLA, Vancouver, Chicago, IEEE) available at Datacite
Software
Code and test data set for the dwell time analysis of enterovirus RNA-dependent RNA polymerases using multiplexed magnetic tweezers, to investigate snap-back synthesis and recombination.
This script constructs a dwell time distribution of tanslocating polymerases, optimized for data acquired with Magnetic or Optical Tweezers. The main function is called . All other files are different function upon which depends; they should be in the same directory.
Additionally, the workshop plans for our non-commercial flow-cell holder are attached.
history
- 2022-08-08 first online, published, posted
publisher
4TU.ResearchData
format
.m (MATLAB file scripts), .mat (MATLAB data container), and PDF
associated peer-reviewed publication
Characterizing single-molecule dynamics of viral RNA-dependent RNA polymerases with multiplexed magnetic tweezers
funding
- Human Frontiers Science Program (RPG0011/2015)
organizations
TU Delft, Faculty of Applied Sciences, Kavli Institute of Nanoscience, Department of Bionanoscience
DATA
files (10)
- 3,323 bytesMD5:
f701685af9bd8c1cf7f823e55809bb34
README.txt - 2,056,291 bytesMD5:
95c3fb6d7bd7949fbf38519013307389
Bottom_Plate.pdf - 951,965 bytesMD5:
d92734e2b42f54d4e4f6fc82a6e09f11
DataExample.mat - 534 bytesMD5:
298de7c5a5b234a830184f320051890a
DwellTimeHist_v3.m - 2,785 bytesMD5:
21a14382b45ec1bb6afe3276a4b67882
DWT_analysis.m - 663 bytesMD5:
11e45fc7768eac81cd31f9dc9d8e237a
Example.m - 494 bytesMD5:
4c246bfab0e5f740d3c8e133faa806f6
find_crossing_time.m - 1,855,227 bytesMD5:
edf5d0b247b66519694a39488cd158b4
Flow_Cell_Holder.pdf - 2,438,626 bytesMD5:
7c44c09e217ead87274646dc768be6f5
Inlet_Outlet_Screw.pdf - 2,104 bytesMD5:
35143e0b10f90430e07fa6e9f8b83cdd
make_bins.m -
download all files (zip)
7,312,012 bytes unzipped