Makrodimitris, Stavros (2020): Protein function prediction using pre-trained ELMO embeddings. Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/uuid:b88d84e1-7408-40d9-a8fc-d734f852dd7a

Dataset

• Artificial Intelligence and Image Processing
• Biochemistry and Cell Biology

Amino acid sequence, Bioinformatics, CAFA, Computational biology, Feature learning techniques, Protein function prediction

CC0

RefWorks, BibTeX, Reference Manager, Endnote, DataCite, NLM, DC, CFF

by Stavros Makrodimitris

This dataset includes the data for training the protein function prediction models at github.com/stamakro/GCN-for-Structure-and-Function. For each protein, a pickle file is provided, containing its sequence, ELMo embedding and labels. It also includes the weights of the trained models that can be applied directly. README file at github.com/stamakro/GCN-for-Structure-and-Function

• 2020-02-04 first online, published, posted

4TU.Centre for Research Data

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TU Delft, Faculty of Electrical Engineering, Mathematics, and Computer Science, Department of Computer Science and Engineering (Mediamatica)