Data and scripts underlying the publication: Unveiling the roles of temporal periodicity, the spatial environment and behavioural modes in terrestrial animal movement
doi: 10.4121/4ed0e7cd-50e7-4bc4-aae7-289fc0e38dc2
CC BY-NC 4.0
Data and scripts underlying the publication: Unveiling the roles of temporal periodicity, the spatial environment and behavioural modes in terrestrial animal movement.
The RData file Linssen_2024_JMovEcol_data contains everything needed to be able to run the code for the analysis:
- Data tables with location data (timestamp, x, y...), one for each species. These data have been pre-processed, cleaned and annotated with environmental covariates as described in the manuscript.
- A custom function collectmuHMMoutput(), which is used to collect all the relevant components of a HMM fit (the model itself, starting parameters, Viterbi decoding et cetera) into one list object.
- A custom function mutatePar0(), which takes starting parameters for a model and creates four sets of perturbations of those starting values (as described in the manuscript under Model fitting).
The R file Linssen_2024_JMovEcol_script contains the code needed to run the analysis. The code can be ran from top to bottom to run the analysis for eland; for wildebeest and zebra the "species" parameter in line 13 should be set to either of these.
- 2024-07-04 first online, published, posted
Theoretical and Computational Ecology Group, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam;
Department of Animal Ecology, Netherlands Institute of Ecology
DATA
- 1,162 bytesMD5:
01defbe0e1ece06e5a84aec2e4823c0cREADME.txt - 16,288,514 bytesMD5:
cd9323bf3afbdeda04cf14a927c062eeLinssen_2024_JMovEcol_data.RData - 21,922 bytesMD5:
65ce56ba082e872c6e8defa8d497e65aLinssen_2024_JMovEcol_script.R -
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