Data accompanying the publication "Testing pseudotopological and nontopological models for SMC-driven DNA loop extrusion against roadblock-traversal experiments"

doi:10.4121/07469f27-61e2-4284-b6e8-73947c8caa93.v1
The doi above is for this specific version of this dataset, which is currently the latest. Newer versions may be published in the future. For a link that will always point to the latest version, please use
doi: 10.4121/07469f27-61e2-4284-b6e8-73947c8caa93
Datacite citation style:
Pradhan, Biswajit; Barth, Roman (2024): Data accompanying the publication "Testing pseudotopological and nontopological models for SMC-driven DNA loop extrusion against roadblock-traversal experiments". Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/07469f27-61e2-4284-b6e8-73947c8caa93.v1
Other citation styles (APA, Harvard, MLA, Vancouver, Chicago, IEEE) available at Datacite
Dataset

Research objective: determine whether pseudotopological models for DNA loop-extruding SMC complexes can explain roadblock bypass experiments (referring to https://doi.org/10.1016/j.celrep.2022.111491)

Type of research: Single-molecule in vitro reconstitution of DNA loop extrusion using purified proteins

Method of data collection: HiLO microscopy

Type of data: Images (.tif). Due to the large size of the raw data, pointers to the data location are included in this dataset

history
  • 2024-01-26 first online, published, posted
publisher
4TU.ResearchData
format
excel/xlsx, jupyter notebook/ipynb, table/csv, Hierarchical Data Format version 5/hdf5
funding
  • ERC Advanced Grant LoopingDNA (no. 883684)
  • NWO grant OCENW.GROOT.2019.012 (grant code OCENW.GROOT.2019.012) NWO
  • NanoFront
  • BaSyC - Building a Synthetic Cell (grant code 024.003.019) [more info...] Dutch Research Council
  • Boehringer Ingelheim
  • Austrian Research Promotion Agency (grant code FFG-852936) Austrian Research Promotion Agency - Headquarter grant
  • European Research Council under the European Union’s Horizon 2020 research and innovation programme GA No 101020558 (grant code 101020558) European Research Council under the European Union’s Horizon 2020 research and innovation programme
  • Human Frontier Science Program RGP0057/2018 (grant code RGP0057/2018))
organizations
TU Delft, Faculty of Applied Sciences, Kavli Institute of Nanoscience Delft, Department of Bionanoscience, Cees Dekker group;
Research Institute of Molecular Pathology (IMP), Vienna, Jan-Michael Peters group

DATA

files (2)