Data accompanying the publication "Testing pseudotopological and nontopological models for SMC-driven DNA loop extrusion against roadblock-traversal experiments"
doi:10.4121/07469f27-61e2-4284-b6e8-73947c8caa93.v1
The doi above is for this specific version of this dataset, which is currently the latest. Newer versions may be published in the future.
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doi: 10.4121/07469f27-61e2-4284-b6e8-73947c8caa93
doi: 10.4121/07469f27-61e2-4284-b6e8-73947c8caa93
Datacite citation style:
Pradhan, Biswajit; Barth, Roman (2024): Data accompanying the publication "Testing pseudotopological and nontopological models for SMC-driven DNA loop extrusion against roadblock-traversal experiments". Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/07469f27-61e2-4284-b6e8-73947c8caa93.v1
Other citation styles (APA, Harvard, MLA, Vancouver, Chicago, IEEE) available at Datacite
Dataset
Research objective: determine whether pseudotopological models for DNA loop-extruding SMC complexes can explain roadblock bypass experiments (referring to https://doi.org/10.1016/j.celrep.2022.111491)
Type of research: Single-molecule in vitro reconstitution of DNA loop extrusion using purified proteins
Method of data collection: HiLO microscopy
Type of data: Images (.tif). Due to the large size of the raw data, pointers to the data location are included in this dataset
history
- 2024-01-26 first online, published, posted
publisher
4TU.ResearchData
format
excel/xlsx, jupyter notebook/ipynb, table/csv, Hierarchical Data Format version 5/hdf5
associated peer-reviewed publication
Testing pseudotopological and nontopological models for SMC-driven DNA loop extrusion against roadblock-traversal experiments
funding
- ERC Advanced Grant LoopingDNA (no. 883684)
- NWO grant OCENW.GROOT.2019.012 (grant code OCENW.GROOT.2019.012) NWO
- NanoFront
- BaSyC - Building a Synthetic Cell (grant code 024.003.019) [more info...] Dutch Research Council
- Boehringer Ingelheim
- Austrian Research Promotion Agency (grant code FFG-852936) Austrian Research Promotion Agency - Headquarter grant
- European Research Council under the European Union’s Horizon 2020 research and innovation programme GA No 101020558 (grant code 101020558) European Research Council under the European Union’s Horizon 2020 research and innovation programme
- Human Frontier Science Program RGP0057/2018 (grant code RGP0057/2018))
organizations
TU Delft, Faculty of Applied Sciences, Kavli Institute of Nanoscience Delft, Department of Bionanoscience, Cees Dekker group; Research Institute of Molecular Pathology (IMP), Vienna, Jan-Michael Peters group
DATA
files (2)
- 120 bytesMD5:
56c2c173dc5900309f581f6ce2fb09ad
ch4_README.txt - 51,985,274 bytesMD5:
b2449ae6e42c8725133f33d0224c5296
codes_roadblocks-bioRxiv_version.zip -
download all files (zip)
51,985,394 bytes unzipped