Data underlying the publication: "PanTools v3: functional annotation, classification, and phylogenomics "

doi: 10.4121/19874485.v1
The doi above is for this specific version of this dataset, which is currently the latest. Newer versions may be published in the future. For a link that will always point to the latest version, please use
doi: 10.4121/19874485
Datacite citation style:
Eef Jonkheer; Sandra Smit (2022): Data underlying the publication: "PanTools v3: functional annotation, classification, and phylogenomics ". Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/19874485.v1
Other citation styles (APA, Harvard, MLA, Vancouver, Chicago, IEEE) available at Datacite
Dataset

SnakeMake pipeline to reperform the pangenome construction and analyses on seven different datasets from the publication: "PanTools v3: functional annotation, classification, and phylogenomics". Pangenome analysis of Drosophila, Arabidopsis thaliana, Saccharomyces cerevisiae, Pectobacterium and SARS-CoV-2. Demonstration of PanTools' scalability on Homo sapiens and Solanum lycopersicum.


history
  • 2022-07-04 first online, published, posted
publisher
4TU.ResearchData
format
FASTA, GFF3, eggNOG-mapper annotation
funding
  • This research was funded by the Dutch Ministry of Economic Affairs in the Topsector Program ``Horticulture and Starting Materials'' (project number: TU 16022) and its partners (NAK, Naktuinbouw and BKD).
organizations
Bioinformatics Group, Wageningen University & Research;
Biointeractions and Plant Health, Wageningen University & Research

DATA

files (4)