Simulation code accompanying the publication

Iain F. Davidson1, Roman Barth2, Sabrina Horn1,3, Richard Janissen2, Benedikt Bauer1†, Cees Dekker2 and Jan-Michael Peters1*: "Cohesin supercoils DNA during loop extrusion", 2024

Affiliations:	
1 Research Institute of Molecular Pathology; Vienna BioCenter, Vienna, Austria.  
2 Department of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology; Delft, The Netherlands.
3 Vienna BioCenter PhD Program, Doctoral School of the University of Vienna and Medical University of Vienna; Vienna, Austria.

*Corresponding author. Email: peters@imp.ac.at
†Present address: BioNTech R&D Austria, Vienna.


Parameters are to be set in the file config.json and can be varied as indicated to simulate EQ and SMC1-4E.
The file SSS.py contains the class SSS and the simulation is simply run by executing SSS().run()