format_phyloseq         Formatting the 'phyloseq-class' Object
format_to_besthit       Formatting the 'phyloseq-class' Object advanced
get_microbiome_data     Download test microbiome data
list_microbiome_data    List of available datasets
microbiome_pipeline     Microbiome analysis pipeline
percent_classified      Summarize the percent taxa classification for
                        'phyloseq-class'
phy_to_ldf              Convert 'phyloseq-class' object to long data
                        format
plot_alpha_diversities
                        Creat a plot for alpha diversities calculated
                        using the 'microbiome' package
plot_ordination_utils   Plot species loading with ordinations
plot_ordiplot_core      Plotting core microbiota on ordinations
plot_read_distribution
                        Distribution of reads
plot_select_taxa        A boxplot for user specified list of taxa
plot_taxa_boxplot       Taxonomic Composition Plot boxplot
plot_taxa_composition   Taxonomic Composition Plot
plot_taxa_cv            Coefficient of variations
plot_taxa_heatmap       Heatmap using 'phyloseq-class' and 'pheatmap'
print_ps                Overview of 'phyloseq-class'
taxa_summary            Give taxa summary at specified taxonomic level
zackular2014            Test data
