README for Figure 2d.zip 
*** This file contains the predicted structure represented in Figure 2d of 
Article: Identification, characterization and classification of Nucleoid-Associated Proteins
Authors: Samuel Schwab, Remus T. Dame
Journal: Molecular Microbiology
Corresponding author: rtdame@chem.leidenuniv.nl

Legend Figure 2d:
The homotetramer of SymE from Escherichia coli as predicted by AlphaFold2. The (disordered) N-terminal tail of SymE is hidden to reduce visual clutter. The DNA, the DNA binding domain, the dimerization domain, and the dimer-dimer domain are colored blue, green, orange, and pink, respectively. The DNA was placed by superimposing the DNA-binding domain of the NMR structure of MazE bound to DNA from Escherichia coli (PDB: 2MRU) (Zorzini et al., 2015).

 *** The data were obtained by generating multiple sequence alignments with MMseqs2, which were subsequently used as inputs for LocalColabFold to predict the protein structures with AlphaFold2 and AlphaFold2-Multimer. The multiple sequence alignments, the predicted aligned errors, the predicted local distance difference tests, and the structure files in PDB format are provided.