Description of the files present in this directory:

- optim_chemostat.m
    Optimizes a proteome for chemostat cultivation based on the residual
    glucose concentration.

- Proteomap.m
    Plots the proteome allocation in a proteomap.

- ProteomeOptimization_CH_X.mat
    Pre-generated optimized steady-state proteome, included as example.

- ProteomeOptimization_Crabtree_X.mat
    Pre-generated optimized series steady-state proteomes for D = 0.05 - 0.4 h-1,
    included as example.

- protmdl.m
    Proteome model

- Overcapacity simulations folder
    Contains scripts to remove proteome overcapacity from the generated proteome.



