{ "cells": [ { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [], "source": [ "import sys\n", "\n", "import glob\n", "import matplotlib.pyplot as plt\n", "import os\n", "import numpy as np\n", "import h5py\n", "import pandas as pd\n", "from functions import *\n", "from pathlib import Path\n", "\n", "plt.rcParams.update({'font.size': 9})\n", "%matplotlib notebook\n", "\n", "TUD_cyan = '#00a6d6ff'\n", "TUD_lightblue = '#6ebbd5ff'\n", "TUD_darkblue = '#1d1c73ff'\n", "TUD_orange = '#e64616ff'\n", "TUD_red = '#e21a1aff'\n", "TUD_yellow = '#ffd100ff'\n", "TUD_green = '#008891ff'\n", "TUD_lightgreen = '#a5ca1aff'\n", "TUD_purple = '#6d177fff'\n", "TUD_grey = '#6b8689ff'\n", "TUD_brown = '#a65628ff'\n", "TUD_pink = '#fb9a99'" ] }, { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [], "source": [ "plt.rcParams.update({'font.size': 9})" ] }, { "cell_type": "code", "execution_count": 5, "metadata": {}, "outputs": [], "source": [ "analyfolder = '/locatio/of/the/dna/files/with/results'\n", "analydir = 'location/of/the/analyses'\n", "\n", "stage = 'hsnr'\n", "\n", "reslist = glob.glob(analyfolder + 'Results/*_results.hdf5')\n", " \n", "respd = gen_respd(reslist, stage, analytype='DNA')" ] }, { "cell_type": "code", "execution_count": 6, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
\n", " | chnl0 event_rate | \n", "chnl1 event_rate | \n", "chnl0 analyte | \n", "chnl1 analyte | \n", "chnl0 color | \n", "chnl1 color | \n", "chnl0 diff_coeff | \n", "chnl1 diff_coeff | \n", "chnl0 diff_coeff_err | \n", "chnl1 diff_coeff_err | \n", "... | \n", "chnl0 rgyr | \n", "chnl1 rgyr | \n", "voltage | \n", "pore_diam | \n", "pore_area | \n", "chnl0 rate_err | \n", "chnl0 concentration unit | \n", "chnl1 rate_err | \n", "chnl1 concentration unit | \n", "order | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
fname | \n", "\n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " |
R9_1104/R9_1104_18/2020_05_11_R9_1104_18_short_DNA.sptw/Results/DA_1000bp_m50mV1_results.hdf5 | \n", "0.000000 | \n", "0.046905 | \n", "None | \n", "1 kbp DNA | \n", "#a65628ff | \n", "#6d177fff | \n", "None | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "60 | \n", "-50.0 | \n", "59x47 | \n", "None | \n", "0.000000 | \n", "0 | \n", "0.027080 | \n", "5.0 | \n", "13 | \n", "
R9_1104/R9_1104_18/2020_05_11_R9_1104_18_short_DNA.sptw/Results/DB_1000bp_0mV_1_results.hdf5 | \n", "0.000000 | \n", "0.196576 | \n", "None | \n", "1 kbp DNA | \n", "#a65628ff | \n", "#6d177fff | \n", "None | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "60 | \n", "0.0 | \n", "59x47 | \n", "None | \n", "0.000000 | \n", "0 | \n", "0.054520 | \n", "5.0 | \n", "14 | \n", "
R9_1104/R9_1104_18/2020_05_11_R9_1104_18_short_DNA.sptw/Results/DC_1000bp_5mV_1_results.hdf5 | \n", "0.000000 | \n", "0.042986 | \n", "None | \n", "1 kbp DNA | \n", "#a65628ff | \n", "#6d177fff | \n", "None | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "60 | \n", "5.0 | \n", "59x47 | \n", "None | \n", "0.000000 | \n", "0 | \n", "0.021493 | \n", "5.0 | \n", "15 | \n", "
R9_1104/R9_1104_18/2020_05_11_R9_1104_18_short_DNA.sptw/Results/DD_1000bp_10mV_1_results.hdf5 | \n", "0.000000 | \n", "0.026475 | \n", "None | \n", "1 kbp DNA | \n", "#a65628ff | \n", "#6d177fff | \n", "None | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "60 | \n", "10.0 | \n", "59x47 | \n", "None | \n", "0.000000 | \n", "0 | \n", "0.018721 | \n", "5.0 | \n", "16 | \n", "
R9_1104/R9_1104_18/2020_05_11_R9_1104_18_short_DNA.sptw/Results/DE_1000bp_20mV_1_results.hdf5 | \n", "0.027057 | \n", "0.027056 | \n", "None | \n", "1 kbp DNA | \n", "#a65628ff | \n", "#6d177fff | \n", "None | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "60 | \n", "20.0 | \n", "59x47 | \n", "None | \n", "0.019132 | \n", "0 | \n", "0.019132 | \n", "5.0 | \n", "17 | \n", "
R9_1104/R9_1104_18/2020_05_11_R9_1104_18_short_DNA.sptw/Results/DF_1000bp_40mV_1_results.hdf5 | \n", "0.013333 | \n", "0.126667 | \n", "None | \n", "1 kbp DNA | \n", "#a65628ff | \n", "#6d177fff | \n", "None | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "60 | \n", "40.0 | \n", "59x47 | \n", "None | \n", "0.006667 | \n", "0 | \n", "0.020548 | \n", "5.0 | \n", "18 | \n", "
R9_1104/R9_1104_18/2020_05_11_R9_1104_18_short_DNA.sptw/Results/DGA_1000bp_50mV_1_results.hdf5 | \n", "0.020000 | \n", "0.873333 | \n", "None | \n", "1 kbp DNA | \n", "#a65628ff | \n", "#6d177fff | \n", "None | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "60 | \n", "50.0 | \n", "59x47 | \n", "None | \n", "0.008165 | \n", "0 | \n", "0.053955 | \n", "5.0 | \n", "19 | \n", "
R9_1104/R9_1104_18/2020_05_11_R9_1104_18_short_DNA.sptw/Results/DGB_1000bp_30mV_1_results.hdf5 | \n", "0.000000 | \n", "0.032958 | \n", "None | \n", "1 kbp DNA | \n", "#a65628ff | \n", "#6d177fff | \n", "None | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "60 | \n", "30.0 | \n", "59x47 | \n", "None | \n", "0.000000 | \n", "0 | \n", "0.023305 | \n", "5.0 | \n", "20 | \n", "
R9_1104/R9_1104_18/2020_05_11_R9_1104_18_short_DNA.sptw/Results/DG_1000bp_60mV_1_results.hdf5 | \n", "0.243334 | \n", "15.320043 | \n", "None | \n", "1 kbp DNA | \n", "#a65628ff | \n", "#6d177fff | \n", "None | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "60 | \n", "60.0 | \n", "59x47 | \n", "None | \n", "0.028480 | \n", "0 | \n", "0.225980 | \n", "5.0 | \n", "21 | \n", "
R9_1104/R9_1104_18/2020_05_11_R9_1104_18_short_DNA.sptw/Results/DH_1000bp_70mV_1_results.hdf5 | \n", "0.413597 | \n", "29.115503 | \n", "None | \n", "1 kbp DNA | \n", "#a65628ff | \n", "#6d177fff | \n", "None | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "60 | \n", "70.0 | \n", "59x47 | \n", "None | \n", "0.059698 | \n", "0 | \n", "0.500876 | \n", "5.0 | \n", "22 | \n", "
R9_1104/R9_1104_18/2020_05_11_R9_1104_18_short_DNA.sptw/Results/DI_1000bp_80mV_1_results.hdf5 | \n", "0.707499 | \n", "65.500158 | \n", "None | \n", "1 kbp DNA | \n", "#a65628ff | \n", "#6d177fff | \n", "None | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "60 | \n", "80.0 | \n", "59x47 | \n", "None | \n", "0.082245 | \n", "0 | \n", "0.791344 | \n", "5.0 | \n", "23 | \n", "
R9_1104/R9_1104_18/2020_05_11_R9_1104_18_short_DNA.sptw/Results/DJ_1000bp_90mV_1_results.hdf5 | \n", "1.376060 | \n", "99.320905 | \n", "None | \n", "1 kbp DNA | \n", "#a65628ff | \n", "#6d177fff | \n", "None | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "60 | \n", "90.0 | \n", "59x47 | \n", "None | \n", "0.145049 | \n", "0 | \n", "1.232303 | \n", "5.0 | \n", "24 | \n", "
R9_1104/R9_1104_18/2020_05_11_R9_1104_18_short_DNA.sptw/Results/DK_1000bp_100mV_1_results.hdf5 | \n", "1.761757 | \n", "141.342464 | \n", "None | \n", "1 kbp DNA | \n", "#a65628ff | \n", "#6d177fff | \n", "None | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "60 | \n", "100.0 | \n", "59x47 | \n", "None | \n", "0.122747 | \n", "0 | \n", "1.099450 | \n", "5.0 | \n", "25 | \n", "
13 rows × 24 columns
\n", "