Scripts & data underlying the publication: Elevation micro-topography boosts growth rates in Salicornia procumbens by amplifying a tidally driven oxygen pump: implications for natural recruitment and restoration Fivash et al. 2020, Annals of Botany, doi: 10.1093/aob/mcz137 --------- This archived dataset contains the raw data and scripts used to produce each figure and statistical result that appears in the manuscript. The contents are organized by figure (Figures 1 - 7, S1 - S9). Each folder contains: One or more datasets (.csv) used to create the figure An R Script (.r) that produces the figure, using the dataset The figure itself (.jpg or .png) Also included: a. The raw planar optode photos (.jpg) used to generate the datasets of Figures 6,7, S5, S6, & S9 b. Associated photo metadata (.txt) c. Pressure logger (tide gauge) data (.csv) used in the planar optode experiments d. Supplementary figure legends (.txt) e. The published manuscript (.pdf) --------- A complete list of contents is as follows: Manuscript figures Figure 1 – Anecdotal field examples (photo figure) Figure 1.png Figure 2 – Experimental design (photo figure) Figure 2.png Figure 3 – Results of Growth experiment #1 Dataset (.csv): Individual-specific harvest.csv R Script (.r): Figure 3 - Growth Exp 1, 3-Way ANOVA.R Figure 3.jpg Figure 4 – Results of Growth experiment #2 Dataset (.csv): Salicornia growth time series.csv R Script (.r): Figure 4 - Growth Exp 2, Salicornia treatment-specific growth curves.R Figure 4.jpg Figure 5 – Results of Ground water drainage experiment Raw dataset: ‘Raw CSV’ folder containing raw .csv data tables. Each data table contains the X-Y coordinates of water’s surface in photo time series from fixed camera position (repeated every 5 minutes). Treatment details are listed in the file’s name, for example: ‘hummock_pot1_tide1.csv’. Dataset (.csv): drainage_experiment_wooden_sticks.csv R Script (.r): Figure 5 - Drainage wooden stick photo time series.R Figure 5.jpg Figure 6 – Results of Soil oxygen experiment Dataset (.csv): Flat: flatOxygenExp.csv & flatTide.csv Hollow: hollowOxygenExp.csv & hollowTide.csv Hummock: hummockOxygenEcp.csv & hummockTide.csv R Script (.r): Figure 6.R Figure: Figure 6.png Figure 7 – Results of Soil oxygen experiment (cont.) Dataset (.csv): none (references Raw dataset: Planar optode photos) R Script (.r): Figure 7.R Figure: Figure 7.png Supplementary figures Figure S1 Dataset (.csv): Individual-specific harvest.csv (Also found with Figure 3) R Script (.r): Figure S1 - Seed loss Figure: Figure S1.png Figure S2 – Experimental design: Growth exp. #2 (photo figure) Figure S2.png Figure S3 – Experimental design: Photo measurement method (photo figure) Figure S3.png Figure S4 Dataset (.csv):Figure S4 - Salicornia area - biomass calibration.csv R Script (.r): Figure S4 - Salicornia area-biomass calibration.R Figure: Figure S4.png Figure S5 – Experimental design: Planar optode method (photo figure) Figure S5.png Figure S6 Processed dataset: Processed planar optode data/CSV/ Hummock Flat Hollow R Script (.r): Figure S6 - oxygen statistics.R Figure: Figure S6.png Figure S7 Dataset (.csv): Figure S7 - Sediment water content .csv R Script (.r): Figure S7.R Figure: Figure S7.png Figure S8 Dataset (.csv): Figure S7 & S8 - Sediment water content .csv (Also found in Figure S7) R Script (.r): Figure S8.R Figure: Figure S8.png Figure S9 Dataset (.csv): none (references Raw dataset: Planar optode photos) R Script (.r): Figure S9.R Movies: Figure S9.gif & Figure S9.mov Raw dataset: Planar optode photos Flat Planar optode photos (for .gif/.mov, [correct photo interval, wrong tidal cycle]) (.jpg) - 1440 planar optode photos Planar optode photos (for statistics) (.jpg) - 1200 planar optode photos Pressure sensor (tide gauge) data (.csv) - tideData_Hummock.csv Experiment metadata: metadata_flat (.txt) Hollow Planar optode photos (.jpg) - 1630 planar optode photos Pressure sensor (tide gauge) data (.csv) - tideData_Hummock.csv Experiment metadata (.txt): metadata_hollow.txt Hummock Planar optode photos (.jpg) - 1633 planar optode photos: 'E5hummock1cm2h10h_1.jpg - E5hummock1cm2h10h_1633.jpg' Pressure sensor (tide gauge) data (.csv) - tideData_Hummock.csv Experiment metadata (.txt): metadata_hummock.txt Other supplementary materials Supplementary figure legends (.txt)