TY - DATA T1 - Matlab tools for analysing cell-curvature interactions, used in the publication "Emergent collective organization of bone cells in complex curvature fields". PY - 2023/01/19 AU - Sebastien Callens UR - https://data.4tu.nl/articles/software/Matlab_tools_for_analysing_cell-curvature_interactions_used_in_the_publication_Emergent_collective_organization_of_bone_cells_in_complex_curvature_fields_/21915963/1 DO - 10.4121/21915963.v1 KW - Matlab KW - Curvature KW - Microscopy N2 -

A collection of Matlab tools for analysing cell-curvature interactions, used in the publication "Emergent collective organization of bone cells in complex curvature fields", Callens et al., (bioRxiv, 2020).


The codes are for quantitative analysis of microscopy data, correlating intensities and cellular orientations to the underlying curvature. Example data is included, and the comments in the code provide explanation of the different steps.

 

Required software tools:


Matlab (these codes were tested in 2018b and 2020a). Codes should work as soon as the software folder is copied in the working directory of Matlab. Running times for all codes on a standard desktop computer should not take more than a couple of seconds (at least below one minute). A set of example data is included.


Overview of the software folder:

ER -