MATLAB scripts proteome adaptation model.zip (4.14 MB)

MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"

software

posted on 28.01.2022, 12:08 by Koen VerhagenKoen Verhagen, Siem Eerden, Baukje Sikkema, Aljoscha Wahl

MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"

Contains scripts for:

- Converting proteome datasets to the model proteome allocation format.

- Generating optimized proteomes for both steady-state and dynamic (feast/famine) conditions under user-specified conditions.

- Determining the overcapacity present in proteome provided as input under user-specified conditions.

Funding

NWO Building Blocks of Life 737.016.001

History

Publisher

4TU.ResearchData

Format

MATLAB scripts (.m), MATLAB data (.mat) and Excel (.xlsx) files

Organizations

Delft University of Technology, Faculty of Applied Sciences, Department of Biotechnology

Usage metrics

Delft University of Technology

Keywords

Kinetic Modeling proteome allocation model resource allocation model MATLAB scripts Proteome adaptation Saccharomyces cerevisiae Dynamic conditions feast/famine

Licence

CC0